Cstdc7 Pseudogene Detail

Summary

• Symbol
  Cstdc7
• Name
  cystatin domain containing 7
• Synonyms
  Gm5689

• Feature Type
  pseudogene
• IDs
  MGI:3647214
  NCBI Gene: 435561
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:42306435-42306728 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 22.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647214	pseudogene	Chr18:42306296-42306806 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024376	protein coding gene	Chr18:40793590-40793883 (+)
A/J	MGP_AJ_G0024343	protein coding gene	Chr18:39387093-39387386 (+)
AKR/J	MGP_AKRJ_G0024312	protein coding gene	Chr18:40466994-40467287 (+)
BALB/cJ	MGP_BALBcJ_G0024343	protein coding gene	Chr18:39459433-39459726 (+)
C3H/HeJ	MGP_C3HHeJ_G0024109	protein coding gene	Chr18:40519460-40519753 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024785	protein coding gene	Chr18:42252767-42253060 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020714	protein coding gene	Chr16:33164810-33173533 (-)
CAST/EiJ	MGP_CASTEiJ_G0023584	protein coding gene	Chr18:40481238-40481531 (+)
CBA/J	MGP_CBAJ_G0024079	protein coding gene	Chr18:43496256-43496549 (+)
DBA/2J	MGP_DBA2J_G0024209	protein coding gene	Chr18:38967688-38967981 (+)
FVB/NJ	MGP_FVBNJ_G0024175	protein coding gene	Chr18:38608194-38608487 (+)
LP/J	MGP_LPJ_G0024293	protein coding gene	Chr18:40862594-40862887 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024206	protein coding gene	Chr18:44760023-44760316 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024834	protein coding gene	Chr18:40345423-40345716 (+)
PWK/PhJ	MGP_PWKPhJ_G0023328	protein coding gene	Chr18:39186175-39186468 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023133	protein coding gene	Chr18:40586808-40587101 (+)
WSB/EiJ	MGP_WSBEiJ_G0023647	protein coding gene	Chr18:40250790-40251083 (+)

Homology

• Gene Tree
  Cstdc7
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000034339 (Evidence)
• NCBI Gene
  435561

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000034339	Ensembl Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	ENSMUST00000041389	Ensembl | MGI Sequence Detail	294	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Cstdc7:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5298	Chr18:42306382-42306388 (+)	-50 bp