Gm6556 Gene Detail

Summary

• Symbol
  Gm6556
• Name
  predicted gene 6556

• Feature Type
  lncRNA gene
• IDs
  MGI:3647197
  NCBI Gene: 625121
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:15634565-15639203 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647197	lncRNA gene	Chr13:15614887-15639203 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015245	unclassified non-coding RNA gene	Chr13:12409145-12431873 (-)
A/J	MGP_AJ_G0015219	unclassified non-coding RNA gene	Chr13:12328400-12353726 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0015181	unclassified non-coding RNA gene	Chr13:12280371-12303770 (-)
C3H/HeJ	MGP_C3HHeJ_G0015005	unclassified non-coding RNA gene	Chr13:12589934-12612923 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015638	unclassified non-coding RNA gene	Chr13:13103923-13132393 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013380	unclassified non-coding RNA gene	Chr13:10955691-10978268 (-)
CAST/EiJ	MGP_CASTEiJ_G0014558	unclassified non-coding RNA gene	Chr13:12284768-12310465 (-)
CBA/J	MGP_CBAJ_G0014984	unclassified non-coding RNA gene	Chr13:13482856-13507059 (-)
DBA/2J	MGP_DBA2J_G0015077	unclassified non-coding RNA gene	Chr13:11942064-11965031 (-)
FVB/NJ	MGP_FVBNJ_G0015088	unclassified non-coding RNA gene	Chr13:11705065-11727833 (-)
LP/J	MGP_LPJ_G0015158	unclassified non-coding RNA gene	Chr13:12659505-12684404 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015115	unclassified non-coding RNA gene	Chr13:13699977-13733392 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015677	unclassified non-coding RNA gene	Chr13:12287910-12310674 (-)
PWK/PhJ	MGP_PWKPhJ_G0014350	unclassified non-coding RNA gene	Chr13:12016225-12042852 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014137	unclassified non-coding RNA gene	Chr13:11399158-11425766 (-)
WSB/EiJ	MGP_WSBEiJ_G0014661	unclassified non-coding RNA gene	Chr13:12295249-12317958 (-)

Homology

• Gene Tree
  Gm6556
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000097806 (Evidence)
• NCBI Gene
  625121

Representative Sequences			Length	Strain/Species
genomic	625121	NCBI Gene Model | MGI Sequence Detail	4639	C57BL/6J
transcript	AK141061	GenBank | ENA | DDBJ | MGI Sequence Detail	1925	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;