Gm6374 Pseudogene Detail

Summary

• Symbol
  Gm6374
• Name
  predicted gene 6374

• Feature Type
  pseudogene
• IDs
  MGI:3647016
  NCBI Gene: 622958
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:83292234-83293021 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 42.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647016	pseudogene	Chr1:83292171-83293943 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010227	pseudogene	Chr1:84291510-84292297 (+)
A/J	MGP_AJ_G0010222	pseudogene	Chr1:81292783-81293570 (+)
AKR/J	MGP_AKRJ_G0010193	pseudogene	Chr1:83501092-83503125 (+)
BALB/cJ	MGP_BALBcJ_G0010197	pseudogene	Chr1:81440234-81441021 (+)
C3H/HeJ	MGP_C3HHeJ_G0010134	pseudogene	Chr1:83880551-83881338 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010456	pseudogene	Chr1:87546603-87547390 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009888	pseudogene	Chr13:70035600-70036390 (+)
CAST/EiJ	MGP_CASTEiJ_G0009962	pseudogene	Chr1:83320056-83320843 (+)
CBA/J	MGP_CBAJ_G0010103	pseudogene	Chr1:90343119-90343906 (+)
DBA/2J	MGP_DBA2J_G0010131	pseudogene	Chr1:80552621-80554683 (+)
FVB/NJ	MGP_FVBNJ_G0010155	pseudogene	Chr1:79673451-79674238 (+)
LP/J	MGP_LPJ_G0010216	pseudogene	Chr1:85387121-85387908 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010115	pseudogene	Chr1:93699196-93699983 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010432	pseudogene	Chr1:83679806-83680593 (+)
PWK/PhJ	MGP_PWKPhJ_G0009866	pseudogene	Chr1:80016344-80017252 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009679	pseudogene	Chr1:82858977-82859764 (+)
WSB/EiJ	MGP_WSBEiJ_G0010026	pseudogene	Chr1:83461214-83462001 (+)

Homology

• Gene Tree
  Gm6374
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6374
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000079140 (Evidence)
• NCBI Gene
  622958

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079140	Ensembl Gene Model | MGI Sequence Detail	788	C57BL/6J
transcript	ENSMUST00000159051	Ensembl | MGI Sequence Detail	788	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm6374:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7645	Chr1:83292172-83292192 (+)	-52 bp