Gm8378 Gene Detail

Summary

• Symbol
  Gm8378
• Name
  predicted gene 8378

• Feature Type
  lncRNA gene
• IDs
  MGI:3646777
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:91641586-91652887 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 45.02 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646777	lncRNA gene	Chr12:91641586-91652887 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015235	unclassified non-coding RNA gene	Chr12:92801639-92812928 (-)
A/J	MGP_AJ_G0015209	unclassified non-coding RNA gene	Chr12:89309592-89320998 (-)
AKR/J	MGP_AKRJ_G0015172	unclassified non-coding RNA gene	Chr12:91717119-91728421 (-)
BALB/cJ	MGP_BALBcJ_G0015171	unclassified non-coding RNA gene	Chr12:89598314-89609555 (-)
C3H/HeJ	MGP_C3HHeJ_G0014995	unclassified non-coding RNA gene	Chr12:92320997-92332305 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015628	unclassified non-coding RNA gene	Chr12:95546612-95558462 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013370	unclassified non-coding RNA gene	Chr12:86746439-86758196 (-)
CAST/EiJ	MGP_CASTEiJ_G0014548	unclassified non-coding RNA gene	Chr12:87239890-87251427 (-)
CBA/J	MGP_CBAJ_G0014974	unclassified non-coding RNA gene	Chr12:99122553-99133845 (-)
DBA/2J	MGP_DBA2J_G0015067	unclassified non-coding RNA gene	Chr12:88779567-88790856 (-)
FVB/NJ	MGP_FVBNJ_G0015078	unclassified non-coding RNA gene	Chr12:87653695-87665017 (-)
LP/J	MGP_LPJ_G0015148	unclassified non-coding RNA gene	Chr12:92592481-92604117 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015105	unclassified non-coding RNA gene	Chr12:101885441-101896717 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015667	unclassified non-coding RNA gene	Chr12:91320035-91331339 (-)
PWK/PhJ	MGP_PWKPhJ_G0014340	unclassified non-coding RNA gene	Chr12:83371539-83383478 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014127	unclassified non-coding RNA gene	Chr12:85463297-85475101 (-)
WSB/EiJ	MGP_WSBEiJ_G0014651	unclassified non-coding RNA gene	Chr12:92081771-92093212 (-)

Homology

• Gene Tree
  Gm8378
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8378
• Find Mice (IMSR)
  12 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000090722 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090722	Ensembl Gene Model | MGI Sequence Detail	11302	C57BL/6J
transcript	ENSMUST00000167777	Ensembl | MGI Sequence Detail	2624	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm8378:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117221	Chr12:91652879-91652923 (-)	-14 bp
Tssr117220	Chr12:91652863-91652878 (-)	16 bp