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Cldn20 Gene Detail
Summary
  • Symbol
    Cldn20
  • Name
    claudin 20
  • Synonyms
    EG621628
  • Feature Type
    protein coding gene
  • IDs
    MGI:3646757
    NCBI Gene: 621628
  • Gene Overview
    MyGene.info: CLDN20
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr17:3532554-3533213 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 2.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    50 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646757
protein coding gene Chr17:3532554-3533213 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023100
protein coding gene Chr17:509578-510237 (+)
A/J MGP_AJ_G0023071
protein coding gene Chr17:614706-615365 (+)
AKR/J MGP_AKRJ_G0023037
protein coding gene Chr17:544049-544708 (+)
BALB/cJ MGP_BALBcJ_G0023073
protein coding gene Chr17:527584-528243 (+)
C3H/HeJ MGP_C3HHeJ_G0022832
protein coding gene Chr17:620422-621081 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023519
protein coding gene Chr17:656096-656755 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021019
protein coding gene Chr17:440835-441494 (+)
CAST/EiJ MGP_CASTEiJ_G0022351
protein coding gene Chr17:604341-605000 (+)
CBA/J MGP_CBAJ_G0022800
protein coding gene Chr17:627834-628493 (+)
DBA/2J MGP_DBA2J_G0022935
protein coding gene Chr17:468745-469404 (+)
FVB/NJ MGP_FVBNJ_G0022909
protein coding gene Chr17:493472-494131 (+)
LP/J MGP_LPJ_G0023004
protein coding gene Chr17:654874-655533 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022930
protein coding gene Chr17:582269-582928 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023536
protein coding gene Chr17:533982-534641 (+)
PWK/PhJ MGP_PWKPhJ_G0022096
protein coding gene Chr17:509531-510190 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021924
protein coding gene Chr17:485064-485723 (+)
WSB/EiJ MGP_WSBEiJ_G0022402
protein coding gene Chr17:539673-540332 (+)



Homology
more
  • Human Ortholog
    CLDN20, claudin 20
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CLDN20, claudin 20
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 49861
    neXtProt AC: NX_P56880
    UniProt: P56880

  • Chr Location
    6q25.3; chr6:155264013-155276548 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Expression
less
  • Literature Summary
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 621628 NCBI Gene Model | MGI Sequence Detail 660 C57BL/6J ±  kb
transcript NM_001101560 RefSeq | MGI Sequence Detail 660 mixed  
polypeptide NP_001095030 RefSeq | MGI Sequence Detail 219 mixed  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
    Developmental Gene Expression 1
  • Earliest
    J:181271 Westmoreland JJ, et al., Dynamic distribution of claudin proteins in pancreatic epithelia undergoing morphogenesis or neoplastic transformation. Dev Dyn. 2012 Mar;241(3):583-94

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory