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Alyreffm2 Pseudogene Detail
Summary
  • Symbol
    Alyreffm2
  • Name
    Aly/REF export factor family member 2
  • Synonyms
    Gm6489
Location &
Maps
more
  • Sequence Map
    Chr1:31326026-31326787 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 11.59 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    79 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646684
 pseudogene Chr1:31326026-31327132 (+)
129S1/SvImJ ENSMUSG00200001118
 pseudogene Chr1:28829181-28829876 (+)
A/J ENSMUSG00195000100
 pseudogene Chr1:28544412-28545107 (+)
AKR/J ENSMUSG00220000822
 pseudogene Chr1:28544534-28545229 (+)
BALB/cJ ENSMUSG00180001198
 pseudogene Chr1:28638263-28638958 (+)
C3H/HeJ ENSMUSG00175000775
 pseudogene Chr1:28544387-28545082 (+)
C57BL/6NJ ENSMUSG00215001095
 pseudogene Chr1:28627493-28628188 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0009038
 pseudogene Chr1:25649129-25649757 (+)
CAST/EiJ ENSTCUG00005000707
 pseudogene Chr1:28695150-28695845 (+)
CBA/J ENSMUSG00210010739
 pseudogene Chr1:28403963-28404658 (+)
DBA/2J ENSMUSG00185016940
 pseudogene Chr1:29469663-29470358 (+)
FVB/NJ ENSMUSG00205006973
 pseudogene Chr1:28558543-28559238 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230000500
 pseudogene Chr1:29499559-29500254 (+)
NOD/ShiLtJ ENSMUSG00190000114
 pseudogene Chr1:28540526-28541221 (+)
NZO/HlLtJ ENSMUSG00225014503
 pseudogene Chr1:32772500-32773195 (+)
PWK/PhJ ENSLUMG00010000318
 pseudogene Chr1:28289682-28290377 (+)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005001968
 pseudogene Chr1:28534786-28535481 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000094215 Ensembl Gene Model | MGI Sequence Detail 762 C57BL/6J ±  kb
transcript ENSMUST00000178167 Ensembl | MGI Sequence Detail 762 Not Applicable  
polypeptide ENSMUSP00000159554 Ensembl | MGI Sequence Detail 253 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR051229 ALYREF mRNA export adapter
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR025715 RNA annealing protein YRA2, C-terminal
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
  • GlyGen
    A0A991ENX0 1 site
Other
Accession IDs
less
MGI:7595544
References
more
  • Summaries
    All 13
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory