Alyreffm2 Pseudogene Detail

Summary

• Symbol
  Alyreffm2
• Name
  Aly/REF export factor family member 2
• Synonyms
  Gm6489

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646684
  NCBI Gene: 624262
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:31326026-31326787 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 11.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  20 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646684	pseudogene	Chr1:31326026-31327132 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010041	pseudogene	Chr1:28835333-28837093 (+)
AKR/J	MGP_AKRJ_G0010021	pseudogene	Chr1:29161756-29162444 (+)
BALB/cJ	MGP_BALBcJ_G0010027	pseudogene	Chr1:28544041-28544682 (+)
C3H/HeJ	MGP_C3HHeJ_G0009960	pseudogene	Chr1:29328892-29329533 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009038	pseudogene	Chr1:25649129-25649757 (+)
CAST/EiJ	MGP_CASTEiJ_G0009865	pseudogene	Chr1:48810975-48811602 (-)
CBA/J	MGP_CBAJ_G0009932	pseudogene	Chr1:31724946-31725587 (+)
DBA/2J	MGP_DBA2J_G0009952	pseudogene	Chr1:27948255-27948899 (-)
FVB/NJ	MGP_FVBNJ_G0009977	pseudogene	Chr1:27511788-27512432 (-)
LP/J	MGP_LPJ_G0010043	pseudogene	Chr1:29471570-29472265 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010426	pseudogene	Chr10:111092375-111093059 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010252	pseudogene	Chr1:29111347-29112042 (+)
PWK/PhJ	MGP_PWKPhJ_G0009703	pseudogene	Chr1:27609497-27610326 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009582	pseudogene	Chr1:48605467-48606094 (+)
WSB/EiJ	MGP_WSBEiJ_G0009931	pseudogene	Chr1:48891764-48892433 (-)

Homology

• Gene Tree
  Alyreffm2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Alyreffm2
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000094215 (Evidence)
• NCBI Gene
  624262

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094215	Ensembl Gene Model | MGI Sequence Detail	762	C57BL/6J
transcript	ENSMUST00000178167	Ensembl | MGI Sequence Detail	762	Not Applicable
polypeptide	ENSMUSP00000159554	Ensembl | MGI Sequence Detail	253	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR025715 Chromatin target of PRMT1 protein, C-terminal
  IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
  IPR035979 RNA-binding domain superfamily
  IPR000504 RNA recognition motif domain

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;