Gm5384 Pseudogene Detail

Summary

• Symbol
  Gm5384
• Name
  predicted gene 5384

• Feature Type
  pseudogene
• IDs
  MGI:3646660
  NCBI Gene: 385336
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:19759896-19760358 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 15.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646660	pseudogene	ChrX:19759896-19760411 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014339	pseudogene	ChrX:14763538-14764000 (+)
A/J	MGP_AJ_G0014349	pseudogene	ChrX:14902765-14903227 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0014299	pseudogene	ChrX:14589956-14590418 (+)
C3H/HeJ	MGP_C3HHeJ_G0014134	pseudogene	ChrX:14959312-14959774 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014758	pseudogene	ChrX:15166846-15167308 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014118	pseudogene	ChrX:15856863-15857325 (+)
DBA/2J	MGP_DBA2J_G0014196	pseudogene	ChrX:14660095-14660557 (+)
FVB/NJ	MGP_FVBNJ_G0014197	pseudogene	ChrX:14581136-14581598 (+)
LP/J	MGP_LPJ_G0014290	pseudogene	ChrX:15023881-15024343 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014232	pseudogene	ChrX:16075584-16076046 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014728	pseudogene	ChrX:14692661-14693123 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0013381	pseudogene	ChrX:14669343-14669765 (+)
WSB/EiJ	MGP_WSBEiJ_G0013839	pseudogene	ChrX:14571497-14571959 (+)

Homology

• Gene Tree
  Gm5384
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000080998 (Evidence)
• NCBI Gene
  385336

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080998	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000120313	Ensembl | MGI Sequence Detail	463	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;