Gm5396 Pseudogene Detail

Summary

• Symbol
  Gm5396
• Name
  predicted pseudogene 5396

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646589
  NCBI Gene: 385454
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:151895919-151896450 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646589	pseudogene	ChrX:151895892-151896458 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014935	pseudogene	ChrX:150917920-150918451 (-)
A/J	MGP_AJ_G0014925	pseudogene	ChrX:150100858-150101389 (-)
AKR/J	MGP_AKRJ_G0014865	pseudogene	ChrX:154929725-154930256 (-)
BALB/cJ	MGP_BALBcJ_G0014882	pseudogene	ChrX:148293430-148293961 (-)
C3H/HeJ	MGP_C3HHeJ_G0014717	pseudogene	ChrX:151166232-151166763 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015367	pseudogene	ChrX:155288051-155288582 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012999	pseudogene	ChrX:141771834-141772370 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014707	pseudogene	ChrX:159769509-159770040 (-)
DBA/2J	MGP_DBA2J_G0014787	pseudogene	ChrX:149137236-149137767 (-)
FVB/NJ	MGP_FVBNJ_G0014771	pseudogene	ChrX:148290134-148290665 (-)
LP/J	MGP_LPJ_G0014888	pseudogene	ChrX:151988557-151989088 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014815	pseudogene	ChrX:168031076-168031607 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015352	pseudogene	ChrX:150435690-150436221 (-)
PWK/PhJ	MGP_PWKPhJ_G0014124	pseudogene	ChrX:127440576-127441176 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013912	pseudogene	ChrX:130908277-130908811 (-)
WSB/EiJ	MGP_WSBEiJ_G0014408	pseudogene	ChrX:148480343-148480874 (-)

Homology

• Gene Tree
  Gm5396
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000084275 (Evidence)
• NCBI Gene
  385454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084275	Ensembl Gene Model | MGI Sequence Detail	532	C57BL/6J
transcript	ENSMUST00000121222	Ensembl | MGI Sequence Detail	532	Not Applicable
polypeptide	XP_036018032	RefSeq | MGI Sequence Detail	188	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;