Defb44-ps Pseudogene Detail

Summary

• Symbol
  Defb44-ps
• Name
  defensin beta 44, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3646526
  NCBI Gene: 654454
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:18280277-18293788 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 5.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  662 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646526	pseudogene	Chr1:18280277-18293798 (-)
129S1/SvImJ	ENSMUSG00200018929	pseudogene	Chr1:15685600-15699104 (-)
A/J	ENSMUSG00195027869	pseudogene	Chr1:15454532-15468044 (-)
AKR/J	ENSMUSG00220008396	pseudogene	Chr1:15495054-15508564 (-)
BALB/cJ	ENSMUSG00180025031	pseudogene	Chr1:15520897-15534408 (-)
C3H/HeJ	ENSMUSG00175000438	pseudogene	Chr1:15446919-15460430 (-)
C57BL/6NJ	ENSMUSG00215014237	pseudogene	Chr1:15512417-15525928 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037018	pseudogene	Chr1:13997084-14016861 (-)
CAST/EiJ	ENSTCUG00005023167	pseudogene	Chr1:15830235-15843760 (-)
CBA/J	ENSMUSG00210002816	pseudogene	Chr1:15324074-15337585 (-)
DBA/2J	ENSMUSG00185003903	pseudogene	Chr1:16356584-16375458 (-)
FVB/NJ	ENSMUSG00205016173	pseudogene	Chr1:15541440-15554951 (-)
JF1/MsJ	ENSUMUG00000025719	pseudogene	Chr1:15608778-15622295 (-)
LP/J	ENSMUSG00230018978	pseudogene	Chr1:16386832-16400336 (-)
NOD/ShiLtJ	ENSMUSG00190032518	pseudogene	Chr1:15433466-15446977 (-)
NZO/HlLtJ	ENSMUSG00225005381	pseudogene	Chr1:19736020-19754894 (-)
PWK/PhJ	ENSLUMG00010023035	pseudogene	Chr1:15247916-15261424 (-)
SPRET/EiJ	ENSMSPG00010027691	pseudogene	Chr1:16039086-16052766 (-)
WSB/EiJ	ENSIUOG00005012222	pseudogene	Chr1:15422274-15435788 (-)

Homology

• Gene Tree
  Defb44-ps
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000070977 (Evidence)
• NCBI Gene
  654454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070977	Ensembl Gene Model | MGI Sequence Detail	13512	C57BL/6J
transcript	ENSMUST00000126871	Ensembl | MGI Sequence Detail	219	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:101568 Patil AA, et al., Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract. Physiol Genomics. 2005 Sep 21;23(1):5-17

TSS for Defb44-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11067	Chr1:18293827-18293832 (-)	-42 bp
Tssr11066	Chr1:18293794-18293806 (-)	-12 bp