Gm6181 Pseudogene Detail

Summary

• Symbol
  Gm6181
• Name
  predicted pseudogene 6181

• Feature Type
  pseudogene
• IDs
  MGI:3646422
  NCBI Gene: 620782
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:52405213-52405476 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 33.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646422	pseudogene	Chr7:52405157-52405594 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013904	pseudogene	Chr7:53544340-53546381 (+)
A/J	MGP_AJ_G0013923	pseudogene	Chr7:52719344-52719568 (+)
AKR/J	MGP_AKRJ_G0013857	pseudogene	Chr7:53935581-53935825 (+)
BALB/cJ	MGP_BALBcJ_G0013881	pseudogene	Chr7:52363238-52363482 (+)
C3H/HeJ	MGP_C3HHeJ_G0013716	pseudogene	Chr7:54347668-54347912 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014314	pseudogene	Chr7:55969587-55969850 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013381	pseudogene	Chr7:45671743-45672725 (+)
CBA/J	MGP_CBAJ_G0013698	pseudogene	Chr7:57872231-57872471 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013777	pseudogene	Chr7:51769574-51769837 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013802	pseudogene	Chr7:57087584-57087847 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014271	pseudogene	Chr7:52922846-52923109 (+)
PWK/PhJ	MGP_PWKPhJ_G0013191	pseudogene	Chr7:45160183-45161154 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012958	pseudogene	Chr7:41113966-41114234 (+)
WSB/EiJ	MGP_WSBEiJ_G0013440	pseudogene	Chr7:53626757-53627020 (+)

Homology

• Gene Tree
  Gm6181
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000074092 (Evidence)
• NCBI Gene
  620782

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074092	Ensembl Gene Model | MGI Sequence Detail	264	C57BL/6J
transcript	ENSMUST00000117187	Ensembl | MGI Sequence Detail	264	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm6181:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr66903	Chr7:52405149-52405163 (+)	-57 bp