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Vmn2r80 Gene Detail
Summary
  • Symbol
    Vmn2r80
  • Name
    vomeronasal 2, receptor 80
  • Synonyms
    EG624765
  • Feature Type
    protein coding gene
  • IDs
    MGI:3646321
    NCBI Gene: 624765
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr10:78984650-79030767 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 39.72 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    96 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646321
 protein coding gene Chr10:78984603-79030846 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017440
 protein coding gene Chr10:79612408-79665855 (+)
A/J MGP_AJ_G0017418
 protein coding gene Chr10:76898890-76980124 (+)
AKR/J MGP_AKRJ_G0017381
 protein coding gene Chr10:78929786-78986853 (+)
BALB/cJ MGP_BALBcJ_G0017380
 protein coding gene Chr10:77018662-77357379 (+)
C3H/HeJ MGP_C3HHeJ_G0017203
 protein coding gene Chr10:79147485-79340083 (+)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0017175
 protein coding gene Chr10:85562802-85604654 (+)
DBA/2J MGP_DBA2J_G0017283
 protein coding gene Chr10:76105118-76159998 (+)
FVB/NJ MGP_FVBNJ_G0017275
 protein coding gene Chr10:75270924-75334066 (+)
LP/J MGP_LPJ_G0017353
 protein coding gene Chr10:80349967-80371293 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017302
 protein coding gene Chr10:87552816-87903973 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017876
 protein coding gene Chr10:79094302-79149829 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0016340
 protein coding gene Chr10:78182054-78197978 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 624765 NCBI Gene Model | MGI Sequence Detail 46118 C57BL/6J ±  kb
transcript NM_001103368 RefSeq | MGI Sequence Detail 2592 C57BL/6  
polypeptide NP_001096838 RefSeq | MGI Sequence Detail 863 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR000337 GPCR, family 3
    IPR017978 GPCR family 3, C-terminal
    IPR000068 GPCR, family 3, extracellular calcium-sensing receptor-related
    IPR011500 GPCR, family 3, nine cysteines domain
    IPR038550 GPCR, family 3, nine cysteines domain superfamily
    IPR004073 GPCR, family 3, vomeronasal receptor, type 2
    IPR028082 Periplasmic binding protein-like I
    IPR001828 Receptor, ligand binding region
References
more
  • Summaries
    All 13
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:296898 Tonelli Gombalova Z, et al., Majority of cerebrospinal fluid-contacting neurons in the spinal cord of C57Bl/6N mice is present in ectopic position unlike in other studied experimental mice strains and mammalian species. J Comp Neurol. 2020 Oct 15;528(15):2523-2550
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory