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Casp16 Pseudogene Detail
Summary
  • Symbol
    Casp16
  • Name
    caspase 16, apoptosis-related cysteine peptidase
  • Synonyms
    Casp16, Casp16-ps, Gm5146
  • Feature Type
    polymorphic pseudogene
  • IDs
    MGI:3646305
    NCBI Gene: 381070
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr17:23551080-23555330 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 11.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646305
polymorphic pseudogene Chr17:23550965-23555704 (-)
129S1/SvImJ MGP_129S1SvImJ_G0009938
polymorphic pseudogene Chr17:22438879-22443832 (-)
A/J MGP_AJ_G0009922
polymorphic pseudogene Chr17:21810362-21812931 (-)
AKR/J MGP_AKRJ_G0009906
polymorphic pseudogene Chr17:21882534-21885097 (-)
BALB/cJ MGP_BALBcJ_G0009907
polymorphic pseudogene Chr17:22021456-22024017 (-)
C3H/HeJ MGP_C3HHeJ_G0009839
polymorphic pseudogene Chr17:22238693-22242684 (-)
C57BL/6NJ MGP_C57BL6NJ_G0010153
polymorphic pseudogene Chr17:23429502-23433646 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0008950
polymorphic pseudogene Chr17:19389935-19392515 (-)
CAST/EiJ MGP_CASTEiJ_G0009657
polymorphic pseudogene Chr17:22067255-22069807 (-)
CBA/J MGP_CBAJ_G0009813
polymorphic pseudogene Chr17:24205469-24208119 (-)
DBA/2J MGP_DBA2J_G0009840
polymorphic pseudogene Chr17:21441618-21444179 (-)
FVB/NJ MGP_FVBNJ_G0009857
polymorphic pseudogene Chr17:21165445-21167982 (-)
LP/J MGP_LPJ_G0009935
polymorphic pseudogene Chr17:22705681-22709143 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0009824
polymorphic pseudogene Chr17:23997878-24000451 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0010126
polymorphic pseudogene Chr17:22160862-22164718 (-)
PWK/PhJ MGP_PWKPhJ_G0009578
polymorphic pseudogene Chr17:20224740-20227532 (-)
SPRET/EiJ MGP_SPRETEiJ_G0009411
polymorphic pseudogene Chr17:20192528-20199067 (-)
WSB/EiJ MGP_WSBEiJ_G0009759
polymorphic pseudogene Chr17:22223474-22226851 (-)



Homology
more
  • Human Ortholog
    CASP16P, caspase 16, pseudogene
  • Vertebrate Orthologs
    6
  • Human Ortholog
    CASP16P, caspase 16, pseudogene
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CASP16
  • Links
    NCBI Gene ID: 197350

  • Chr Location
    16p13.3; chr16:3144291-3149946 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 381070 NCBI Gene Model | MGI Sequence Detail 4251 C57BL/6J ±  kb
transcript BN000368 GenBank | EMBL | DDBJ | MGI Sequence Detail 531 C57BL/6J  
polypeptide I6L890 UniProt | EBI | MGI Sequence Detail 176 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR029030 Caspase-like domain superfamily
    IPR002398 Peptidase C14 family
    IPR001309 Peptidase C14, p20 domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 8
    Gene Ontology 1
  • Earliest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/11/2020
MGI 6.14
The Jackson Laboratory