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Casp16-ps Pseudogene Detail
Summary
  • Symbol
    Casp16-ps
  • Name
    caspase 16, apoptosis-related cysteine peptidase, pseudogene
  • Synonyms
    Casp16, Gm5146
  • Feature Type
    polymorphic pseudogene
  • IDs
    MGI:3646305
    NCBI Gene: 381070
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr17:23551080-23555330 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 11.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646305
polymorphic pseudogene Chr17:23550965-23555704 (-)
129S1/SvImJ MGP_129S1SvImJ_G0009938
polymorphic pseudogene Chr17:22438879-22443832 (-)
A/J MGP_AJ_G0009922
polymorphic pseudogene Chr17:21810362-21812931 (-)
AKR/J MGP_AKRJ_G0009906
polymorphic pseudogene Chr17:21882534-21885097 (-)
BALB/cJ MGP_BALBcJ_G0009907
polymorphic pseudogene Chr17:22021456-22024017 (-)
C3H/HeJ MGP_C3HHeJ_G0009839
polymorphic pseudogene Chr17:22238693-22242684 (-)
C57BL/6NJ MGP_C57BL6NJ_G0010153
polymorphic pseudogene Chr17:23429502-23433646 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0008950
polymorphic pseudogene Chr17:19389935-19392515 (-)
CAST/EiJ MGP_CASTEiJ_G0009657
polymorphic pseudogene Chr17:22067255-22069807 (-)
CBA/J MGP_CBAJ_G0009813
polymorphic pseudogene Chr17:24205469-24208119 (-)
DBA/2J MGP_DBA2J_G0009840
polymorphic pseudogene Chr17:21441618-21444179 (-)
FVB/NJ MGP_FVBNJ_G0009857
polymorphic pseudogene Chr17:21165445-21167982 (-)
LP/J MGP_LPJ_G0009935
polymorphic pseudogene Chr17:22705681-22709143 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0009824
polymorphic pseudogene Chr17:23997878-24000451 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0010126
polymorphic pseudogene Chr17:22160862-22164718 (-)
PWK/PhJ MGP_PWKPhJ_G0009578
polymorphic pseudogene Chr17:20224740-20227532 (-)
SPRET/EiJ MGP_SPRETEiJ_G0009411
polymorphic pseudogene Chr17:20192528-20199067 (-)
WSB/EiJ MGP_WSBEiJ_G0009759
polymorphic pseudogene Chr17:22223474-22226851 (-)



Homology
more
  • Human Ortholog
    CASP16P, caspase 16, pseudogene
  • Vertebrate Orthologs
    6
  • Human Ortholog
    CASP16P, caspase 16, pseudogene
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CASP16
  • Links
    NCBI Gene ID: 197350

  • Chr Location
    16p13.3; chr16:3144291-3149946 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 381070 NCBI Gene Model | MGI Sequence Detail 4251 C57BL/6J ±  kb
transcript BN000368 GenBank | EMBL | DDBJ | MGI Sequence Detail 531 C57BL/6J  
polypeptide I6L890 UniProt | EBI | MGI Sequence Detail 176 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR029030 Caspase-like domain superfamily
    IPR001309 Peptidase C14, p20 domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 7
  • Earliest
    J:23000 MGD Nomenclature Committee, 2/14/1995;
  • Latest
    J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory