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Casp16 Pseudogene Detail
Summary
  • Symbol
    Casp16
  • Name
    caspase 16, apoptosis-related cysteine peptidase
  • Synonyms
    Casp16, Casp16-ps, Gm5146
  • Feature Type
    polymorphic pseudogene
  • IDs
    MGI:3646305
    NCBI Gene: 381070
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr17:23770054-23774304 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 11.66 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646305
polymorphic pseudogene Chr17:23769939-23774678 (-)
129S1/SvImJ MGP_129S1SvImJ_G0009938
polymorphic pseudogene Chr17:22438879-22443832 (-)
A/J MGP_AJ_G0009922
polymorphic pseudogene Chr17:21810362-21812931 (-)
AKR/J MGP_AKRJ_G0009906
polymorphic pseudogene Chr17:21882534-21885097 (-)
BALB/cJ MGP_BALBcJ_G0009907
polymorphic pseudogene Chr17:22021456-22024017 (-)
C3H/HeJ MGP_C3HHeJ_G0009839
polymorphic pseudogene Chr17:22238693-22242684 (-)
C57BL/6NJ MGP_C57BL6NJ_G0010153
polymorphic pseudogene Chr17:23429502-23433646 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0008950
polymorphic pseudogene Chr17:19389935-19392515 (-)
CAST/EiJ MGP_CASTEiJ_G0009657
polymorphic pseudogene Chr17:22067255-22069807 (-)
CBA/J MGP_CBAJ_G0009813
polymorphic pseudogene Chr17:24205469-24208119 (-)
DBA/2J MGP_DBA2J_G0009840
polymorphic pseudogene Chr17:21441618-21444179 (-)
FVB/NJ MGP_FVBNJ_G0009857
polymorphic pseudogene Chr17:21165445-21167982 (-)
LP/J MGP_LPJ_G0009935
polymorphic pseudogene Chr17:22705681-22709143 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0009824
polymorphic pseudogene Chr17:23997878-24000451 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0010126
polymorphic pseudogene Chr17:22160862-22164718 (-)
PWK/PhJ MGP_PWKPhJ_G0009578
polymorphic pseudogene Chr17:20224740-20227532 (-)
SPRET/EiJ MGP_SPRETEiJ_G0009411
polymorphic pseudogene Chr17:20192528-20199067 (-)
WSB/EiJ MGP_WSBEiJ_G0009759
polymorphic pseudogene Chr17:22223474-22226851 (-)



Homology
more
  • Human Ortholog
    CASP16P, caspase 16, pseudogene
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CASP16P, caspase 16, pseudogene
  • Synonyms
    CASP16
  • Links
    NCBI Gene ID: 197350

  • Chr Location
    16p13.3; chr16:3144291-3149946 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 381070 NCBI Gene Model | MGI Sequence Detail 4251 C57BL/6J ±  kb
transcript BN000368 GenBank | ENA | DDBJ | MGI Sequence Detail 531 C57BL/6J  
polypeptide I6L890 UniProt | EBI | MGI Sequence Detail 176 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR029030 Caspase-like domain superfamily
    IPR002398 Peptidase C14 family
    IPR001309 Peptidase C14, p20 domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 7
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 2/14/1995;
  • Latest
    J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/03/2022
MGI 6.21
The Jackson Laboratory