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Clrn2 Gene Detail
Summary
  • Symbol
    Clrn2
  • Name
    clarin 2
  • Synonyms
    EG624224
  • Feature Type
    protein coding gene
  • IDs
    MGI:3646230
    NCBI Gene: 624224
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr5:45453751-45464149 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 24.93 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    87 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646230
protein coding gene Chr5:45453751-45464149 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029532
protein coding gene Chr5:44156586-44166968 (+)
A/J MGP_AJ_G0029500
protein coding gene Chr5:42622221-42632603 (+)
AKR/J MGP_AKRJ_G0029448
protein coding gene Chr5:44111051-44122009 (+)
BALB/cJ MGP_BALBcJ_G0029509
protein coding gene Chr5:43094898-43105264 (+)
C3H/HeJ MGP_C3HHeJ_G0029232
protein coding gene Chr5:44116170-44127600 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029963
protein coding gene Chr5:46246974-46257479 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027202
protein coding gene Chr5:39792156-39802246 (+)
CAST/EiJ MGP_CASTEiJ_G0028640
protein coding gene Chr5:43260609-43271168 (+)
CBA/J MGP_CBAJ_G0029201
protein coding gene Chr5:47509549-47524584 (+)
DBA/2J MGP_DBA2J_G0029347
protein coding gene Chr5:42709723-42720319 (+)
FVB/NJ MGP_FVBNJ_G0029307
protein coding gene Chr5:42137834-42148800 (+)
LP/J MGP_LPJ_G0029432
protein coding gene Chr5:44640991-44651375 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029335
protein coding gene Chr5:48244263-48255483 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029996
protein coding gene Chr5:43630274-43640653 (+)
PWK/PhJ MGP_PWKPhJ_G0028364
protein coding gene Chr5:41835230-41845805 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028198
protein coding gene Chr5:43070134-43081424 (+)
WSB/EiJ MGP_WSBEiJ_G0028721
protein coding gene Chr5:43689893-43700305 (+)



Homology
more
  • Human Ortholog
    CLRN2, clarin 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CLRN2, clarin 2
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 645104
    neXtProt AC: NX_A0PK11
    UniProt: A0PK11

  • Chr Location
    4p15.32; chr4:17515165-17527104 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 84057
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CLRN2
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Radiation induced
    2
  • Spontaneous
    1
  • Targeted
    1
  • Genomic Mutations
    5 involving Clrn2
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 624224 NCBI Gene Model | MGI Sequence Detail 10399 C57BL/6J ±  kb
transcript NM_001163317 RefSeq | MGI Sequence Detail 944 Not Specified  
polypeptide NP_001156789 RefSeq | MGI Sequence Detail 232 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR026748 Clarin
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 30
    Diseases 1
    Phenotypes 20
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory