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Gm5524 Gene Detail
Summary
  • Symbol
    Gm5524
  • Name
    predicted gene 5524
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3646041
    NCBI Gene: 433281
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:27923127-27941268 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 10.98 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    98 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646041
 lncRNA gene Chr1:27923059-27941903 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004789
 lincRNA gene Chr1:25862995-25883161 (+)
A/J MGP_AJ_G0004770
 lincRNA gene Chr1:25305451-25323831 (+)
AKR/J MGP_AKRJ_G0004749
 lincRNA gene Chr1:25599578-25617854 (+)
BALB/cJ MGP_BALBcJ_G0004752
 lincRNA gene Chr1:25067928-25093064 (+)
C3H/HeJ MGP_C3HHeJ_G0004700
 lincRNA gene Chr1:25715808-25736941 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004902
 lincRNA gene Chr1:27083014-27101884 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004335
 lincRNA gene Chr1:23075568-23093536 (+)
CAST/EiJ MGP_CASTEiJ_G0004656
 lincRNA gene Chr1:25694931-25715078 (+)
CBA/J MGP_CBAJ_G0004693
 lincRNA gene Chr1:27741185-27771264 (+)
DBA/2J MGP_DBA2J_G0004711
 lincRNA gene Chr1:24768477-24787050 (+)
FVB/NJ MGP_FVBNJ_G0004731
 lincRNA gene Chr1:24437934-24455814 (+)
LP/J MGP_LPJ_G0004790
 lincRNA gene Chr1:26121515-26140465 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004716
 lincRNA gene Chr1:29244824-29277214 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004906
 lincRNA gene Chr1:25501460-25522424 (+)
PWK/PhJ MGP_PWKPhJ_G0004608
 lincRNA gene Chr1:24491919-24511204 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004536
 lincRNA gene Chr1:25611281-25631119 (+)
WSB/EiJ MGP_WSBEiJ_G0004698
 lincRNA gene Chr1:25489445-25510037 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 433281 NCBI Gene Model | MGI Sequence Detail 18142 C57BL/6J ±  kb
transcript NR_151583 RefSeq | MGI Sequence Detail 1793 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
Other
Accession IDs
less
MGI:2138370
References
more
  • Summaries
    All 15
    Phenotypes 2
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory