Gm5421 Pseudogene Detail

Summary

• Symbol
  Gm5421
• Name
  predicted gene 5421

• Feature Type
  pseudogene
• IDs
  MGI:3645718
  NCBI Gene: 432438
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:22219338-22221691 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 10.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645718	pseudogene	Chr10:22219309-22222045 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010490	pseudogene	Chr10:19496210-19499509 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010465	pseudogene	Chr10:19624751-19626945 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010737	pseudogene	Chr10:20746383-20748783 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010041	pseudogene	Chr15:75901118-75924963 (+)
CAST/EiJ	MGP_CASTEiJ_G0010887	pseudogene	Chr15:82448547-82477791 (+)
CBA/J	MGP_CBAJ_G0010360	pseudogene	Chr10:21671037-21673371 (+)
DBA/2J	MGP_DBA2J_G0010392	pseudogene	Chr10:19339659-19341993 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010482	pseudogene	Chr10:20069569-20072790 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010382	pseudogene	Chr10:21838380-21895335 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011438	pseudogene	Chr15:81748187-81774453 (+)
PWK/PhJ	MGP_PWKPhJ_G0010759	pseudogene	Chr15:78967584-78994131 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010583	pseudogene	Chr15:81533914-81564330 (+)
WSB/EiJ	MGP_WSBEiJ_G0010283	pseudogene	Chr10:19851339-19897234 (+)

Homology

• Gene Tree
  Gm5421
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5421
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000097245 (Evidence)
• NCBI Gene
  432438

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097245	Ensembl Gene Model | MGI Sequence Detail	2354	C57BL/6J
transcript	ENSMUST00000181698	Ensembl | MGI Sequence Detail	2354	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm5421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92697	Chr10:22219301-22219313 (+)	-31 bp
Tssr92698	Chr10:22219325-22219340 (+)	-5 bp
Tssr92699	Chr10:22219342-22219365 (+)	16 bp