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Tdg-ps Pseudogene Detail
Summary
  • Symbol
    Tdg-ps
  • Name
    thymine DNA glycosylase, pseudogene
  • Synonyms
    Gm5806
Location &
Maps
more
  • Sequence Map
    Chr15:82516295-82519242 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 38.62 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645587
pseudogene Chr15:82516295-82519278 (.)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TDG, thymine DNA glycosylase
  • Vertebrate Orthologs
    11
  • Human Ortholog
    TDG, thymine DNA glycosylase
    Orthology source: HomoloGene
  • Synonyms
    hTDG
  • Links
    NCBI Gene ID: 6996
    neXtProt AC: NX_Q13569
    UniProt: Q13569

  • Chr Location
    12q23.3; chr12:103965815-103988878 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 2415
    1 human;2 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TDG
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    19 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Genomic Mutations
    3 involving Tdg-ps
  • Find Mice (IMSR)
Expression
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 545124 NCBI Gene Model | MGI Sequence Detail 2948 C57BL/6J ±  kb
transcript XM_006521630 RefSeq | MGI Sequence Detail 2948 C57BL/6J  
polypeptide XP_006521693 RefSeq | MGI Sequence Detail 421 C57BL/6J  
For the selected sequence
References
more
  • Summaries
    All 23
    Diseases 1
    Phenotypes 19
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory