Ppp1r2-ps3 Pseudogene Detail

Summary

• Symbol
  Ppp1r2-ps3
• Name
  protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3

• Feature Type
  pseudogene
• IDs
  MGI:3645534
  NCBI Gene: 546723
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:30516328-30516945 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 25.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645534	pseudogene	Chr19:30516276-30517118 (-)
129S1/SvImJ	ENSMUSG00200021019	pseudogene	Chr19:27257785-27258402 (-)
A/J	ENSMUSG00195037472	pseudogene	Chr19:27409268-27409885 (-)
AKR/J	ENSMUSG00220020137	pseudogene	Chr19:27466269-27466886 (-)
BALB/cJ	ENSMUSG00180013681	pseudogene	Chr19:27741433-27742050 (-)
C3H/HeJ	ENSMUSG00175026565	pseudogene	Chr19:27121805-27122422 (-)
C57BL/6NJ	ENSMUSG00215030712	pseudogene	Chr19:27154524-27155141 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019026	pseudogene	Chr19:27012521-27013132 (-)
CBA/J	ENSMUSG00210014941	pseudogene	Chr19:27352700-27353317 (-)
DBA/2J	ENSMUSG00185026469	pseudogene	Chr19:27739491-27740108 (-)
FVB/NJ	ENSMUSG00205013656	pseudogene	Chr19:27123553-27124170 (-)
JF1/MsJ	ENSUMUG00000041289	pseudogene	Chr19:27973147-27973764 (-)
LP/J	ENSMUSG00230028781	pseudogene	Chr19:28551319-28551936 (-)
NOD/ShiLtJ	ENSMUSG00190022804	pseudogene	Chr19:27108483-27109100 (-)
NZO/HlLtJ	ENSMUSG00225029770	pseudogene	Chr19:32301162-32301779 (-)
PWK/PhJ	ENSLUMG00010036638	pseudogene	Chr19:27375175-27375792 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005029576	pseudogene	Chr19:26830012-26830629 (-)

Homology

• Gene Tree
  Ppp1r2-ps3
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000058816 (Evidence)
• NCBI Gene
  546723

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058816	Ensembl Gene Model | MGI Sequence Detail	618	C57BL/6J
transcript	ENSMUST00000078012	Ensembl | MGI Sequence Detail	618	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 4

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Ppp1r2-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158804	Chr19:30517100-30517126 (-)	-168 bp