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Sox1ot Gene Detail
Summary
  • Symbol
    Sox1ot
  • Name
    Sox1 overlapping transcript
  • Synonyms
    Gm5607
  • Feature Type
    sense overlapping lncRNA gene
  • IDs
    MGI:3645522
    NCBI Gene: 434280
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:12385771-12436732 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 5.73 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    408 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645522
sense overlapping lncRNA gene Chr8:12385771-12436768 (+)
129S1/SvImJ MGP_129S1SvImJ_G0037118
sense overlapping lncRNA gene Chr8:9676104-9732368 (+)
A/J MGP_AJ_G0037105
sense overlapping lncRNA gene Chr8:9326218-9377700 (+)
AKR/J MGP_AKRJ_G0037053
sense overlapping lncRNA gene Chr8:9582697-9633619 (+)
BALB/cJ MGP_BALBcJ_G0037096
sense overlapping lncRNA gene Chr8:9465071-9516553 (+)
C3H/HeJ MGP_C3HHeJ_G0036783
sense overlapping lncRNA gene Chr8:9773984-9826976 (+)
C57BL/6NJ MGP_C57BL6NJ_G0037610
sense overlapping lncRNA gene Chr8:10029507-10083688 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034653
sense overlapping lncRNA gene Chr8:8827287-8880016 (+)
CAST/EiJ MGP_CASTEiJ_G0035970
sense overlapping lncRNA gene Chr8:9528192-9581002 (+)
CBA/J MGP_CBAJ_G0036758
sense overlapping lncRNA gene Chr8:10458229-10515696 (+)
DBA/2J MGP_DBA2J_G0036933
sense overlapping lncRNA gene Chr8:9288743-9339719 (+)
FVB/NJ MGP_FVBNJ_G0036882
sense overlapping lncRNA gene Chr8:9272424-9323422 (+)
LP/J MGP_LPJ_G0036980
sense overlapping lncRNA gene Chr8:9588100-9646011 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036891
sense overlapping lncRNA gene Chr8:10730492-10788798 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0037727
sense overlapping lncRNA gene Chr8:9625840-9679662 (+)
PWK/PhJ MGP_PWKPhJ_G0035664
sense overlapping lncRNA gene Chr8:9302255-9355077 (+)
SPRET/EiJ MGP_SPRETEiJ_G0035470
sense overlapping lncRNA gene Chr8:9493428-9562265 (+)
WSB/EiJ MGP_WSBEiJ_G0036172
sense overlapping lncRNA gene Chr8:9660819-9715272 (+)



Homology
more
  • Human Ortholog
    SOX1-OT, SOX1 overlapping transcript
  • Human Ortholog
    SOX1-OT, SOX1 overlapping transcript
    Orthology source: HGNC
  • Synonyms
    LINC00403
  • Links
    NCBI Gene ID: 100505996

  • Chr Location
    chr13:111972310-112108015 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 434280 NCBI Gene Model | MGI Sequence Detail 50962 C57BL/6J ±  kb
transcript NR_027975 RefSeq | MGI Sequence Detail 5092 C57BL/6  
polypeptide Q6NZL2 UniProt | EBI | MGI Sequence Detail 217 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 1
References
more
  • Summaries
    All 14
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:241993 Ahmad A, et al., Expression of a SOX1 overlapping transcript in neural differentiation and cancer models. Cell Mol Life Sci. 2017 Nov;74(22):4245-4258

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/12/2021
MGI 6.16
The Jackson Laboratory