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Sox1ot Gene Detail
Summary
  • Symbol
    Sox1ot
  • Name
    Sox1 overlapping transcript
  • Synonyms
    Gm5607
Location &
Maps
more
  • Sequence Map
    Chr8:12385771-12436732 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 5.73 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    408 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645522
sense overlapping lncRNA gene Chr8:12385771-12436768 (+)
129S1/SvImJ MGP_129S1SvImJ_G0037118
sense overlapping lncRNA gene Chr8:9676104-9732368 (+)
A/J MGP_AJ_G0037105
sense overlapping lncRNA gene Chr8:9326218-9377700 (+)
AKR/J MGP_AKRJ_G0037053
sense overlapping lncRNA gene Chr8:9582697-9633619 (+)
BALB/cJ MGP_BALBcJ_G0037096
sense overlapping lncRNA gene Chr8:9465071-9516553 (+)
C3H/HeJ MGP_C3HHeJ_G0036783
sense overlapping lncRNA gene Chr8:9773984-9826976 (+)
C57BL/6NJ MGP_C57BL6NJ_G0037610
sense overlapping lncRNA gene Chr8:10029507-10083688 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034653
sense overlapping lncRNA gene Chr8:8827287-8880016 (+)
CAST/EiJ MGP_CASTEiJ_G0035970
sense overlapping lncRNA gene Chr8:9528192-9581002 (+)
CBA/J MGP_CBAJ_G0036758
sense overlapping lncRNA gene Chr8:10458229-10515696 (+)
DBA/2J MGP_DBA2J_G0036933
sense overlapping lncRNA gene Chr8:9288743-9339719 (+)
FVB/NJ MGP_FVBNJ_G0036882
sense overlapping lncRNA gene Chr8:9272424-9323422 (+)
LP/J MGP_LPJ_G0036980
sense overlapping lncRNA gene Chr8:9588100-9646011 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036891
sense overlapping lncRNA gene Chr8:10730492-10788798 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0037727
sense overlapping lncRNA gene Chr8:9625840-9679662 (+)
PWK/PhJ MGP_PWKPhJ_G0035664
sense overlapping lncRNA gene Chr8:9302255-9355077 (+)
SPRET/EiJ MGP_SPRETEiJ_G0035470
sense overlapping lncRNA gene Chr8:9493428-9562265 (+)
WSB/EiJ MGP_WSBEiJ_G0036172
sense overlapping lncRNA gene Chr8:9660819-9715272 (+)



Homology
more
  • Human Ortholog
    SOX1-OT, SOX1 overlapping transcript
  • Human Ortholog
    SOX1-OT, SOX1 overlapping transcript
    Orthology source: HGNC
  • Synonyms
    LINC00403
  • Links
    NCBI Gene ID: 100505996

  • Chr Location
    chr13:111972310-112108015 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 434280 NCBI Gene Model | MGI Sequence Detail 50962 C57BL/6J ±  kb
transcript NR_027975 RefSeq | MGI Sequence Detail 5092 C57BL/6  
polypeptide Q6NZL2 UniProt | EBI | MGI Sequence Detail 217 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 1
References
more
  • Summaries
    All 14
    Phenotypes 3
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:241993 Ahmad A, et al., Expression of a SOX1 overlapping transcript in neural differentiation and cancer models. Cell Mol Life Sci. 2017 Nov;74(22):4245-4258

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory