Zfp660 Gene Detail

Summary

• Symbol
  Zfp660
• Name
  zinc finger protein 660
• Synonyms
  Gm8008

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3645415
  NCBI Gene: 666257
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:122732313-122743223 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 73.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  303 from dbSNP Build 142
• Strain Annotations
  34

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645415	protein coding gene	Chr9:122732062-122743223 (+)
129S1/SvImJ	ENSMUSG00200031819	lncRNA gene	Chr9:119859942-119870848 (+)
129S1/SvImJ	ENSMUSG00200026392	protein coding gene	Chr9:119859911-119870834 (+)
A/J	ENSMUSG00195029019	lncRNA gene	Chr9:118999507-119010603 (+)
A/J	ENSMUSG00195024953	protein coding gene	Chr9:118999476-119010998 (+)
AKR/J	ENSMUSG00220019953	lncRNA gene	Chr9:119471495-119482401 (+)
AKR/J	ENSMUSG00220018315	protein coding gene	Chr9:119471464-119482387 (+)
BALB/cJ	ENSMUSG00180029904	lncRNA gene	Chr9:119539348-119550442 (+)
BALB/cJ	ENSMUSG00180025007	protein coding gene	Chr9:119539317-119550837 (+)
C3H/HeJ	ENSMUSG00175019766	lncRNA gene	Chr9:119775692-119786786 (+)
C3H/HeJ	ENSMUSG00175017491	protein coding gene	Chr9:119775661-119787181 (+)
C57BL/6NJ	ENSMUSG00215036006	lncRNA gene	Chr9:119695065-119705973 (+)
C57BL/6NJ	ENSMUSG00215016900	protein coding gene	Chr9:119695034-119705959 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016422	protein coding gene	Chr9:119363275-119370834 (+)
CAST/EiJ	ENSTCUG00005017126	lncRNA gene	Chr9:119363306-119373453 (+)
CBA/J	ENSMUSG00210043695	lncRNA gene	Chr9:119499808-119510562 (+)
CBA/J	ENSMUSG00210034307	protein coding gene	Chr9:119499777-119510959 (+)
DBA/2J	ENSMUSG00185014981	protein coding gene	Chr9:119835428-119846612 (+)
DBA/2J	ENSMUSG00185017360	lncRNA gene	Chr9:119835459-119846215 (+)
FVB/NJ	ENSMUSG00205021633	protein coding gene	Chr9:119666047-119677567 (+)
FVB/NJ	ENSMUSG00205030087	lncRNA gene	Chr9:119666078-119677172 (+)
JF1/MsJ	ENSUMUG00000047532	lncRNA gene	Chr9:119633067-119643554 (+)
LP/J	ENSMUSG00230033814	protein coding gene	Chr9:120000060-120010985 (+)
LP/J	ENSMUSG00230037781	lncRNA gene	Chr9:120000091-120010999 (+)
NOD/ShiLtJ	ENSMUSG00190014224	protein coding gene	Chr9:119442936-119453867 (+)
NOD/ShiLtJ	ENSMUSG00190015123	lncRNA gene	Chr9:119442967-119453881 (+)
NZO/HlLtJ	ENSMUSG00225023443	protein coding gene	Chr9:120260380-120271303 (+)
NZO/HlLtJ	ENSMUSG00225024009	lncRNA gene	Chr9:120260411-120271317 (+)
PWK/PhJ	ENSLUMG00010033769	protein coding gene	Chr9:119526886-119539592 (+)
PWK/PhJ	ENSLUMG00010040052	lncRNA gene	Chr9:119526951-119539606 (+)
SPRET/EiJ	ENSMSPG00010025691	lncRNA gene	Chr9:121240262-121249144 (+)
SPRET/EiJ	ENSMSPG00010022427	protein coding gene	Chr9:121241165-121249377 (+)
WSB/EiJ	ENSIUOG00005022947	lncRNA gene	Chr9:118870475-118881234 (+)
WSB/EiJ	ENSIUOG00005020559	protein coding gene	Chr9:118870444-118881631 (+)

Homology

• Gene Tree
  Zfp660
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  53
• RefSeq
  6

• Ensembl
  ENSMUSG00000111063 (Evidence)
• NCBI Gene
  666257

Representative Sequences			Length	Strain/Species
genomic	666257	NCBI Gene Model | MGI Sequence Detail	10911	C57BL/6J
transcript	NM_001370967	RefSeq | MGI Sequence Detail	5659	C57BL/6
polypeptide	NP_001340918	RefSeq | MGI Sequence Detail	337	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5906196

References

• Summaries
  All 6
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Zfp660:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87865	Chr9:122732303-122732328 (+)	3 bp
Tssr87866	Chr9:122732358-122732373 (+)	53 bp