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Trim43a Gene Detail
Summary
  • Symbol
    Trim43a
  • Name
    tripartite motif-containing 43A
  • Synonyms
    Gm6021
  • Feature Type
    protein coding gene
  • IDs
    MGI:3645218
    NCBI Gene: 547109
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr9:88462944-88470872 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 47.24 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645218
protein coding gene Chr9:88462944-88470877 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035111
protein coding gene Chr9:89465696-89473222 (+)
A/J MGP_AJ_G0035092
protein coding gene Chr9:86350384-86359350 (+)
AKR/J MGP_AKRJ_G0035020
protein coding gene Chr9:88387497-88396502 (+)
BALB/cJ MGP_BALBcJ_G0035082
protein coding gene Chr9:86238165-86262852 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0034872
protein coding gene Chr9:85193901-85203425 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0034909
protein coding gene Chr9:97050822-97059497 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035628
protein coding gene Chr9:89112280-89131213 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRIM43, tripartite motif containing 43
  • Vertebrate Orthologs
    20
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM43, tripartite motif containing 43
  • Synonyms
    TRIM43A
  • Links
    NCBI Gene ID: 129868
    neXtProt AC: NX_Q96BQ3
    UniProt: Q96BQ3

  • Chr Location
    2q11.1; chr2:95592018-95599723 (+)  GRCh38.p7

  • Human Ortholog
    TRIM43B, tripartite motif containing 43B
  • Links
    NCBI Gene ID: 653192
    neXtProt AC: NX_A6NCK2
    UniProt: A6NCK2

  • Chr Location
    2q11.1; chr2:95476967-95484731 (-)  GRCh38.p7

  • Human Ortholog
    TRIM49, tripartite motif containing 49
  • Synonyms
    RNF18, TRIM49A, TRIM49L2
  • Links
    NCBI Gene ID: 57093
    neXtProt AC: NX_P0CI25
    UniProt: P0CI25

  • Chr Location
    11q14.3; chr11:89797655-89808575 (-)  GRCh38.p7

  • Human Ortholog
    TRIM49B, tripartite motif containing 49B
  • Links
    NCBI Gene ID: 283116
    neXtProt AC: NX_A6NDI0
    UniProt: A6NDI0

  • Chr Location
    11p11.12; chr11:49031596-49038049 (+)  GRCh38.p7

  • Human Ortholog
    TRIM49C, tripartite motif containing 49C
  • Synonyms
    TRIM49L2
  • Links
    NCBI Gene ID: 642612
    neXtProt AC: NX_P0CI26
    UniProt: P0CI26

  • Chr Location
    11q14.3; chr11:90031106-90042025 (+)  GRCh38.p7

  • Human Ortholog
    TRIM49D1, tripartite motif containing 49D1
  • Synonyms
    TRIM49D, TRIM49D1P, TRIM49D2, TRIM49D2P, TRIM49DP
  • Links
    NCBI Gene ID: 399939
    neXtProt AC: NX_C9J1S8
    UniProt: C9J1S8

  • Chr Location
    11q14.3; chr11:89911472-89920410 (-)  GRCh38.p7

  • Human Ortholog
    TRIM49D2, tripartite motif containing 49D2
  • Synonyms
    TRIM48L1, TRIM49D1, TRIM49D2P, TRIM49L, TRIM49L1
  • Links
    NCBI Gene ID: 729384
    neXtProt AC: NX_C9J1S8
    UniProt: C9J1S8

  • Chr Location
    11q14.3; chr11:89924064-89933063 (+)  GRCh38.p7

  • Human Ortholog
    TRIM51, tripartite motif-containing 51
  • Synonyms
    SPRYD5, TRIM51A
  • Links
    NCBI Gene ID: 84767
    neXtProt AC: NX_Q9BSJ1
    UniProt: Q9BSJ1

  • Chr Location
    11q12.1; chr11:55883297-55891810 (+)  GRCh38.p7

  • Human Ortholog
    TRIM51G, tripartite motif-containing 51G
  • Synonyms
    TRIM51GP
  • Links
    NCBI Gene ID: 120824
    UniProt: A0A3B3IT33

  • Chr Location
    11p11.12; chr11:48975326-48983826 (-)  GRCh38.p7

  • Human Ortholog
    TRIM64, tripartite motif containing 64
  • Synonyms
    C11orf28, TRIM64A
  • Links
    NCBI Gene ID: 120146
    neXtProt AC: NX_A6NGJ6
    UniProt: A6NGJ6

  • Chr Location
    11q14.3; chr11:89966068-89974147 (+)  GRCh38.p7

  • Human Ortholog
    TRIM64B, tripartite motif containing 64B
  • Links
    NCBI Gene ID: 642446
    neXtProt AC: NX_A6NI03
    UniProt: A6NI03

  • Chr Location
    11q14.3; chr11:89870188-89878456 (-)  GRCh38.p7

  • Human Ortholog
    TRIM64C, tripartite motif containing 64C
  • Links
    NCBI Gene ID: 646754
    neXtProt AC: NX_A6NLI5
    UniProt: A6NLI5

  • Chr Location
    11p11.12; chr11:49053714-49059112 (-)  GRCh38.p7

  • Human Ortholog
    TRIM77, tripartite motif containing 77
  • Synonyms
    TRIM77P
  • Links
    NCBI Gene ID: 390231
    neXtProt AC: NX_I1YAP6
    UniProt: I1YAP6

  • Chr Location
    11q14.3; chr11:89710299-89717872 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090693 Ensembl Gene Model | MGI Sequence Detail 7929 C57BL/6J ±  kb
transcript ENSMUST00000164661 Ensembl | MGI Sequence Detail 1981 Not Applicable  
polypeptide ENSMUSP00000127527 Ensembl | MGI Sequence Detail 445 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 59
    cDNA 57
    Primer pair 2

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:154127 Stanghellini I, et al., Trim43a, Trim43b, and Trim43c: Novel mouse genes expressed specifically in mouse preimplantation embryos. Gene Expr Patterns. 2009 Dec;9(8):595-602
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/13/2022
MGI 6.21
The Jackson Laboratory