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Trim43a Gene Detail
Summary
  • Symbol
    Trim43a
  • Name
    tripartite motif-containing 43A
  • Synonyms
    Gm6021
  • Feature Type
    protein coding gene
  • IDs
    MGI:3645218
    NCBI Gene: 547109
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr9:88581036-88588823 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 47.24 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645218
protein coding gene Chr9:88580891-88588823 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035111
protein coding gene Chr9:89465696-89473222 (+)
A/J MGP_AJ_G0035092
protein coding gene Chr9:86350384-86359350 (+)
AKR/J MGP_AKRJ_G0035020
protein coding gene Chr9:88387497-88396502 (+)
BALB/cJ MGP_BALBcJ_G0035082
protein coding gene Chr9:86238165-86262852 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0034872
protein coding gene Chr9:85193901-85203425 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0034909
protein coding gene Chr9:97050822-97059497 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035628
protein coding gene Chr9:89112280-89131213 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 547109 NCBI Gene Model | MGI Sequence Detail 7788 C57BL/6J ±  kb
transcript NM_001357687 RefSeq | MGI Sequence Detail 1989 C57BL/6  
polypeptide Q3TL54 UniProt | EBI | MGI Sequence Detail 445 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR001870 B30.2/SPRY domain
    IPR000315 B-box-type zinc finger
    IPR003879 Butyrophylin-like, SPRY domain
    IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    IPR018957 Zinc finger, C3HC4 RING-type
    IPR013083 Zinc finger, RING/FYVE/PHD-type
    IPR001841 Zinc finger, RING-type
    IPR017907 Zinc finger, RING-type, conserved site
Molecular
Reagents
less
  • All nucleic 59
    cDNA 57
    Primer pair 2

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:154127 Stanghellini I, et al., Trim43a, Trim43b, and Trim43c: Novel mouse genes expressed specifically in mouse preimplantation embryos. Gene Expr Patterns. 2009 Dec;9(8):595-602
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/14/2019
MGI 6.14
The Jackson Laboratory