About   Help   FAQ
Gm5965 Gene Detail
Summary
  • Symbol
    Gm5965
  • Name
    predicted gene 5965
  • Feature Type
    protein coding gene
  • IDs
    MGI:3645197
    NCBI Gene: 546672
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:88777857-88778546 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 51.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    40 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3645197
protein coding gene Chr16:88777857-88778728 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022994
protein coding gene Chr16:89600947-89602943 (+)
A/J MGP_AJ_G0022962
protein coding gene Chr16:85439735-85440367 (+)
AKR/J MGP_AKRJ_G0022932
protein coding gene Chr16:88048179-88048841 (+)
BALB/cJ MGP_BALBcJ_G0022964
protein coding gene Chr16:85972487-85973119 (+)
C3H/HeJ MGP_C3HHeJ_G0022725
protein coding gene Chr16:88606128-88606760 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023411
protein coding gene Chr16:92479009-92479641 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020915
protein coding gene Chr16:83269468-83270230 (+)
CAST/EiJ MGP_CASTEiJ_G0022247
protein coding gene Chr16:89042282-89042954 (+)
CBA/J MGP_CBAJ_G0022694
protein coding gene Chr16:96444612-96445313 (+)
DBA/2J MGP_DBA2J_G0022828
protein coding gene Chr16:85373753-85374385 (+)
FVB/NJ MGP_FVBNJ_G0022803
protein coding gene Chr16:84466024-84466656 (+)
LP/J MGP_LPJ_G0022898
protein coding gene Chr16:89279683-89281340 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022823
protein coding gene Chr16:100988515-100989147 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023429
protein coding gene Chr16:88538772-88540084 (+)
PWK/PhJ MGP_PWKPhJ_G0021991
protein coding gene Chr16:85532119-85532981 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021821
protein coding gene Chr16:88096406-88097208 (+)
WSB/EiJ MGP_WSBEiJ_G0022296
protein coding gene Chr16:88774426-88775218 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Expression
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 546672 NCBI Gene Model | MGI Sequence Detail 690 C57BL/6J ±  kb
transcript XM_030249362 RefSeq | MGI Sequence Detail 690 C57BL/6J  
polypeptide A0A571BEP9 UniProt | EBI | MGI Sequence Detail 216 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007951 Keratin-associated protein, PMG type
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 11
    Phenotypes 4
  • Earliest
    J:185269 Raveau M, et al., The app-runx1 region is critical for birth defects and electrocardiographic dysfunctions observed in a down syndrome mouse model. PLoS Genet. 2012 May;8(5):e1002724
  • Latest
    J:262380 Watson-Scales S, et al., Analysis of motor dysfunction in Down Syndrome reveals motor neuron degeneration. PLoS Genet. 2018 May;14(5):e1007383

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/05/2019
MGI 6.14
The Jackson Laboratory