Gm6520 Pseudogene Detail

Summary

• Symbol
  Gm6520
• Name
  predicted gene 6520

• Feature Type
  pseudogene
• IDs
  MGI:3645184
  NCBI Gene: 624684
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:157594102-157594511 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 81.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645184	pseudogene	Chr3:157594102-157594540 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012484	pseudogene	Chr3:162037215-162037624 (-)
A/J	MGP_AJ_G0012479	pseudogene	Chr3:156136724-156137133 (-)
AKR/J	MGP_AKRJ_G0012443	pseudogene	Chr3:160279143-160279552 (-)
BALB/cJ	MGP_BALBcJ_G0012461	pseudogene	Chr3:155941563-155941972 (-)
C3H/HeJ	MGP_C3HHeJ_G0012324	pseudogene	Chr3:160685764-160686173 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012775	pseudogene	Chr3:167339636-167340045 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011129	pseudogene	Chr3:150751426-150751836 (-)
CAST/EiJ	MGP_CASTEiJ_G0012090	pseudogene	Chr3:160831960-160832369 (-)
CBA/J	MGP_CBAJ_G0012304	pseudogene	Chr3:173298240-173298649 (-)
DBA/2J	MGP_DBA2J_G0012357	pseudogene	Chr3:155184753-155185162 (-)
FVB/NJ	MGP_FVBNJ_G0012359	pseudogene	Chr3:152533807-152534216 (-)
LP/J	MGP_LPJ_G0012431	pseudogene	Chr3:163370579-163370988 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012366	pseudogene	Chr3:181882540-181882949 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012779	pseudogene	Chr3:159962356-159962765 (-)
PWK/PhJ	MGP_PWKPhJ_G0011926	pseudogene	Chr3:155110912-155111321 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011745	pseudogene	Chr3:158183207-158183616 (-)
WSB/EiJ	MGP_WSBEiJ_G0012116	pseudogene	Chr3:160922930-160923339 (-)

Homology

• Gene Tree
  Gm6520
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104862 (Evidence)
• NCBI Gene
  624684

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104862	Ensembl Gene Model | MGI Sequence Detail	410	C57BL/6J
transcript	ENSMUST00000200636	Ensembl | MGI Sequence Detail	410	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6520:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36291	Chr3:157594558-157594565 (-)	-51 bp