Gm5602 Gene Detail

Summary

• Symbol
  Gm5602
• Name
  predicted gene 5602

• Feature Type
  lncRNA gene
• IDs
  MGI:3645136
  NCBI Gene: 434249
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:130463015-130468060 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 73.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645136	lncRNA gene	Chr7:130463015-130494461 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015696	unclassified non-coding RNA gene	Chr7:135413646-135418677 (-)
A/J	MGP_AJ_G0015674	unclassified non-coding RNA gene	Chr7:131713824-131718853 (-)
AKR/J	MGP_AKRJ_G0015637	unclassified non-coding RNA gene	Chr7:135216853-135221896 (-)
BALB/cJ	MGP_BALBcJ_G0015635	unclassified non-coding RNA gene	Chr7:131412840-131417871 (-)
C3H/HeJ	MGP_C3HHeJ_G0015457	unclassified non-coding RNA gene	Chr7:135083144-135088175 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016090	unclassified non-coding RNA gene	Chr7:140627823-140632852 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013819	unclassified non-coding RNA gene	Chr7:132867052-132871912 (-)
CAST/EiJ	MGP_CASTEiJ_G0015012	unclassified non-coding RNA gene	Chr7:126896255-126901280 (-)
CBA/J	MGP_CBAJ_G0015438	unclassified non-coding RNA gene	Chr7:145430556-145435587 (-)
DBA/2J	MGP_DBA2J_G0015534	unclassified non-coding RNA gene	Chr7:129716008-129721039 (-)
FVB/NJ	MGP_FVBNJ_G0015540	unclassified non-coding RNA gene	Chr7:129568954-129573985 (-)
LP/J	MGP_LPJ_G0015614	unclassified non-coding RNA gene	Chr7:136894992-136900023 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015562	unclassified non-coding RNA gene	Chr7:146375013-146380044 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016132	unclassified non-coding RNA gene	Chr7:134195900-134200931 (-)
PWK/PhJ	MGP_PWKPhJ_G0014794	unclassified non-coding RNA gene	Chr7:122783525-122788614 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014583	unclassified non-coding RNA gene	Chr7:120967003-120972066 (-)
WSB/EiJ	MGP_WSBEiJ_G0015117	unclassified non-coding RNA gene	Chr7:135146361-135151385 (-)

Homology

• Gene Tree
  Gm5602
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086108 (Evidence)
• NCBI Gene
  434249

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086108	Ensembl Gene Model | MGI Sequence Detail	5046	C57BL/6J
transcript	ENSMUST00000146366	Ensembl | MGI Sequence Detail	1763	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm5602:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75167	Chr7:130469093-130469122 (-)	-1,048 bp