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Pou5f1-rs8 Pseudogene Detail
Summary
  • Symbol
    Pou5f1-rs8
  • Name
    POU domain, class 5, transcription factor 1, related sequence 8
  • Synonyms
    Gm6539, Otf3h, Otf3-rs8
  • Feature Type
    pseudogene
  • IDs
    MGI:101886
    NCBI Gene: 624936
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:51967669-51969066 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 29.26 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_101886
 pseudogene ChrX:51967608-51969272 (+)
129S1/SvImJ MGP_129S1SvImJ_G0014425
 pseudogene ChrX:48099418-48100815 (+)
A/J MGP_AJ_G0014435
 pseudogene ChrX:47956275-47957672 (+)
AKR/J MGP_AKRJ_G0014362
 pseudogene ChrX:49270776-49272173 (+)
BALB/cJ MGP_BALBcJ_G0014387
 pseudogene ChrX:47492681-47494078 (+)
C3H/HeJ MGP_C3HHeJ_G0014221
 pseudogene ChrX:48357666-48359063 (+)
C57BL/6NJ MGP_C57BL6NJ_G0014843
 pseudogene ChrX:49248462-49249859 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0012634
 pseudogene ChrX:45413749-45415118 (+)
CAST/EiJ MGP_CASTEiJ_G0013861
 pseudogene ChrX:35795054-35796451 (+)
CBA/J MGP_CBAJ_G0014203
 pseudogene ChrX:50605387-50606784 (+)
DBA/2J MGP_DBA2J_G0014285
 pseudogene ChrX:47734887-47736284 (+)
FVB/NJ MGP_FVBNJ_G0014283
 pseudogene ChrX:47457128-47458525 (+)
LP/J MGP_LPJ_G0014379
 pseudogene ChrX:48427542-48428939 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0014316
 pseudogene ChrX:52153023-52154420 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0014824
 pseudogene ChrX:47980316-47981713 (+)
PWK/PhJ MGP_PWKPhJ_G0013673
 pseudogene ChrX:35293049-35294446 (+)
SPRET/EiJ MGP_SPRETEiJ_G0013468
 pseudogene ChrX:36616936-36618306 (+)
WSB/EiJ MGP_WSBEiJ_G0013927
 pseudogene ChrX:47543850-47545247 (+)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000083683 Ensembl Gene Model | MGI Sequence Detail 1398 C57BL/6J ±  kb
transcript ENSMUST00000119157 Ensembl | MGI Sequence Detail 1064 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGD-MRK-13078, MGD-MRK-18712, MGD-MRK-19417, MGI:3645062
References
more
  • Summaries
    All 8
  • Earliest
    J:11320 Siracusa LD, et al., Chromosomal location of the octamer transcription factors, Otf-1, Otf-2, and Otf-3, defines multiple Otf-3-related sequences dispersed in the mouse genome. Genomics. 1991 Jun;10(2):313-26
  • Latest
    J:224363 Scarola M, et al., Epigenetic silencing of Oct4 by a complex containing SUV39H1 and Oct4 pseudogene lncRNA. Nat Commun. 2015;6:7631
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory