Rps12-ps5 Pseudogene Detail

Summary

• Symbol
  Rps12-ps5
• Name
  ribosomal protein S12, pseudogene 5
• Synonyms
  Gm9122

• Feature Type
  pseudogene
• IDs
  MGI:3644977
  NCBI Gene: 668354
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:29962688-29963076 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 17.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644977	pseudogene	Chr7:29962606-29963089 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013855	pseudogene	Chr7:29245435-29247361 (+)
A/J	MGP_AJ_G0013858	pseudogene	Chr7:28474493-28474885 (+)
AKR/J	MGP_AKRJ_G0013805	pseudogene	Chr7:29203214-29203606 (+)
BALB/cJ	MGP_BALBcJ_G0013837	pseudogene	Chr7:28649968-28650360 (+)
C3H/HeJ	MGP_C3HHeJ_G0013660	pseudogene	Chr7:29643820-29646080 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014233	pseudogene	Chr7:30192427-30192825 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013334	pseudogene	Chr7:22898025-22898390 (+)
CBA/J	MGP_CBAJ_G0013642	pseudogene	Chr7:31646956-31648653 (+)
DBA/2J	MGP_DBA2J_G0013722	pseudogene	Chr7:28203552-28203944 (+)
FVB/NJ	MGP_FVBNJ_G0013713	pseudogene	Chr7:28319838-28320226 (+)
LP/J	MGP_LPJ_G0013797	pseudogene	Chr7:29567993-29568385 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013735	pseudogene	Chr7:30902781-30904348 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014215	pseudogene	Chr7:28701085-28701473 (+)
PWK/PhJ	MGP_PWKPhJ_G0013146	pseudogene	Chr7:23235816-23236866 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rps12-ps5
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  2

• Ensembl
  ENSMUSG00000081565 (Evidence)
• NCBI Gene
  668354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081565	Ensembl Gene Model | MGI Sequence Detail	389	C57BL/6J
transcript	ENSMUST00000118272	Ensembl | MGI Sequence Detail	389	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rps12-ps5:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65666	Chr7:29962599-29962604 (+)	-86 bp