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H2afb3 Gene Detail
Summary
  • Symbol
    H2afb3
  • Name
    H2A histone family, member B3
  • Synonyms
    EG624957, H2A.Bbd3, H2afb3-ps
  • Feature Type
    protein coding gene
  • IDs
    MGI:3644875
    NCBI Gene: 624957
  • Alliance
Location &
Maps
more
  • Sequence Map
    ChrX:120312748-120313095 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 49.58 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    16 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644875
protein coding gene ChrX:120312582-120313226 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036042
protein coding gene ChrX:113471457-113471804 (+)
A/J MGP_AJ_G0036027
protein coding gene ChrX:116801634-116801981 (-)
AKR/J MGP_AKRJ_G0035941
protein coding gene ChrX:116834970-116835317 (+)
BALB/cJ MGP_BALBcJ_G0036019
protein coding gene ChrX:115280254-115280601 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0036539
protein coding gene ChrX:116817253-116817600 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0035008
protein coding gene ChrX:97914445-97914792 (-)
CBA/J MGP_CBAJ_G0035695
protein coding gene ChrX:120541807-120542154 (+)
DBA/2J MGP_DBA2J_G0035848
protein coding gene ChrX:112466248-112466595 (+)
FVB/NJ MGP_FVBNJ_G0035788
protein coding gene ChrX:111389392-111389739 (+)
LP/J MGP_LPJ_G0035941
protein coding gene ChrX:114405787-114406134 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035824
protein coding gene ChrX:130596446-130596793 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036570
protein coding gene ChrX:116703774-116704121 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0035148
protein coding gene ChrX:115331484-115331831 (-)



Homology
more
  • Human Ortholog
    H2AFB1, H2A histone family member B1
  • Vertebrate Orthologs
    12
  • Human Ortholog
    H2AFB1, H2A histone family member B1
    Orthology source: HomoloGene
  • Synonyms
    H2A.B, H2A.Bbd
  • Links
    NCBI Gene ID: 474382
    neXtProt AC: NX_P0C5Y9
    UniProt: P0C5Y9

  • Chr Location
    Xq28; chrX:154885042-154885558 (+)  GRCh38.p7

  • Human Ortholog
    H2AFB2, H2A histone family member B2
    Orthology source: HomoloGene
  • Synonyms
    H2A.Bbd
  • Links
    NCBI Gene ID: 474381
    neXtProt AC: NX_P0C5Z0
    UniProt: P0C5Z0

  • Chr Location
    Xq28; chrX:155380706-155381299 (+)  GRCh38.p7

  • Human Ortholog
    H2AFB3, H2A histone family member B3
    Orthology source: HomoloGene
  • Synonyms
    H2ABBD, H2AFB
  • Links
    NCBI Gene ID: 83740
    neXtProt AC: NX_P0C5Z0
    UniProt: P0C5Z0

  • Chr Location
    Xq28; chrX:155459419-155459935 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000083616 Ensembl Gene Model | MGI Sequence Detail 348 C57BL/6J ±  kb
transcript ENSMUST00000122050 Ensembl | MGI Sequence Detail 348 Not Applicable  
polypeptide ENSMUSP00000138211 Ensembl | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 12
    Gene Ontology 3
    Phenotypes 1
  • Earliest
    J:173007 Ishibashi T, et al., H2A.Bbd: an X-chromosome-encoded histone involved in mammalian spermiogenesis. Nucleic Acids Res. 2010 Apr;38(6):1780-9
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory