Gm7857 Pseudogene Detail

Summary

• Symbol
  Gm7857
• Name
  predicted gene 7857

• Feature Type
  pseudogene
• IDs
  MGI:3644849
  NCBI Gene: 108168456
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:133582269-133582626 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 56.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644849	pseudogene	ChrX:133582254-133582663 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014826	pseudogene	ChrX:131869367-131869724 (+)
A/J	MGP_AJ_G0014823	pseudogene	ChrX:131296280-131296637 (+)
AKR/J	MGP_AKRJ_G0014760	pseudogene	ChrX:135502902-135503259 (+)
BALB/cJ	MGP_BALBcJ_G0014776	pseudogene	ChrX:129734650-129735007 (+)
C3H/HeJ	MGP_C3HHeJ_G0014607	pseudogene	ChrX:131957278-131957635 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0012916	pseudogene	ChrX:123468669-123469019 (+)
CAST/EiJ	MGP_CASTEiJ_G0014227	pseudogene	ChrX:112822150-112822507 (+)
CBA/J	MGP_CBAJ_G0014600	pseudogene	ChrX:139838128-139838485 (+)
DBA/2J	MGP_DBA2J_G0014686	pseudogene	ChrX:130598967-130599324 (+)
FVB/NJ	MGP_FVBNJ_G0014666	pseudogene	ChrX:129926823-129927180 (+)
LP/J	MGP_LPJ_G0014781	pseudogene	ChrX:132754993-132755350 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014713	pseudogene	ChrX:147191873-147192230 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015240	pseudogene	ChrX:131307188-131307518 (+)
PWK/PhJ	MGP_PWKPhJ_G0014028	pseudogene	ChrX:109768680-109769101 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013820	pseudogene	ChrX:113470240-113470597 (+)
WSB/EiJ	MGP_WSBEiJ_G0014308	pseudogene	ChrX:129681732-129682089 (+)

Homology

• Gene Tree
  Gm7857
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082655 (Evidence)
• NCBI Gene
  108168456

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082655	Ensembl Gene Model | MGI Sequence Detail	358	C57BL/6J
transcript	ENSMUST00000117957	Ensembl | MGI Sequence Detail	358	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7857:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162004	ChrX:133582218-133582241 (+)	-39 bp