Gm5089 Gene Detail

Summary

• Symbol
  Gm5089
• Name
  predicted gene 5089
• Synonyms
  C030005G22Rik

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3644731
  NCBI Gene: 328479
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr14:122365679-122451146 bp, - strand
• From NCBI annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 65.95 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644731	lncRNA gene	Chr14:122365239-122451146 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0021670	protein coding gene	Chr14:120346763-120365827 (-)
A/J	MGP_AJ_G0021630	protein coding gene	Chr14:115671982-115688877 (-)
AKR/J	MGP_AKRJ_G0021606	protein coding gene	Chr14:119413326-119432475 (-)
BALB/cJ	MGP_BALBcJ_G0021636	protein coding gene	Chr14:116222340-116238388 (-)
C3H/HeJ	MGP_C3HHeJ_G0021414	protein coding gene	Chr14:119308944-119325988 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0022076	protein coding gene	Chr14:124964318-124981491 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019614	protein coding gene	Chr14:111533808-111550736 (-)
CAST/EiJ	MGP_CASTEiJ_G0020929	protein coding gene	Chr14:117223417-117242037 (-)
CBA/J	MGP_CBAJ_G0021382	protein coding gene	Chr14:129709305-129731395 (-)
DBA/2J	MGP_DBA2J_G0021505	protein coding gene	Chr14:115531141-115547218 (-)
FVB/NJ	MGP_FVBNJ_G0021483	protein coding gene	Chr14:113884084-113900550 (-)
LP/J	MGP_LPJ_G0021573	protein coding gene	Chr14:121254079-121271122 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0021510	protein coding gene	Chr14:134695358-134714331 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022099	protein coding gene	Chr14:119012087-119028139 (-)
PWK/PhJ	MGP_PWKPhJ_G0020673	protein coding gene	Chr14:112591940-112610039 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0020511	protein coding gene	Chr14:115178976-115200065 (-)
WSB/EiJ	MGP_WSBEiJ_G0020985	protein coding gene	Chr14:119677872-119695184 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  8 strains or lines available

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO

Interactions

• Gm5089 interacts with 137 markers (Mir1b, Mir10b, Mir16-2, ...) View All

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2
• UniProt
  2
• UniGene
  86095

• Ensembl
  ENSMUSG00000064052 (Evidence), ENSMUSG00000115263 (Evidence)
• NCBI Gene
  328479

Representative Sequences			Length	Strain/Species
genomic	328479	NCBI Gene Model | MGI Sequence Detail	85468	C57BL/6J
transcript	NR_033325	RefSeq | MGI Sequence Detail	2008	C57BL/6
polypeptide	A1L3C8	UniProt | EBI | MGI Sequence Detail	106	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:3028045

References

• Summaries
  All 16

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm5089:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130331	Chr14:122451263-122451270 (-)	-121 bp
Tssr4536	Chr14:122451193-122451200 (-)	-51 bp
Tssr130330	Chr14:122451156-122451186 (-)	-25 bp
Tssr130329	Chr14:122451130-122451150 (-)	6 bp
Tssr130328	Chr14:122451109-122451121 (-)	31 bp
Tssr130327	Chr14:122451096-122451107 (-)	44 bp
Tssr130326	Chr14:122451080-122451093 (-)	59 bp