Rpl31-ps18 Pseudogene Detail

Summary

• Symbol
  Rpl31-ps18
• Name
  ribosomal protein L31, pseudogene 18
• Synonyms
  Gm9228

• Feature Type
  pseudogene
• IDs
  MGI:3644718
  NCBI Gene: 668536
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:51780664-51781040 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 45.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644718	pseudogene	Chr19:51780664-51781071 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011498	pseudogene	Chr19:51845956-51846333 (+)
A/J	MGP_AJ_G0011493	pseudogene	Chr19:49270339-49270715 (+)
AKR/J	MGP_AKRJ_G0011458	pseudogene	Chr19:50844814-50845190 (+)
BALB/cJ	MGP_BALBcJ_G0011474	pseudogene	Chr19:49333930-49334306 (+)
C3H/HeJ	MGP_C3HHeJ_G0011361	pseudogene	Chr19:51021836-51022213 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011764	pseudogene	Chr19:53079194-53079570 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010304	pseudogene	Chr19:48311856-48312233 (+)
CAST/EiJ	MGP_CASTEiJ_G0011157	pseudogene	Chr19:50946840-50947217 (+)
CBA/J	MGP_CBAJ_G0011330	pseudogene	Chr19:55699127-55699504 (+)
DBA/2J	MGP_DBA2J_G0011387	pseudogene	Chr19:49087080-49087457 (+)
FVB/NJ	MGP_FVBNJ_G0011392	pseudogene	Chr19:48805895-48806272 (+)
LP/J	MGP_LPJ_G0011454	pseudogene	Chr19:51687758-51689436 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011388	pseudogene	Chr19:55159812-55160189 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011751	pseudogene	Chr19:50998429-50998805 (+)
PWK/PhJ	MGP_PWKPhJ_G0011014	pseudogene	Chr19:48988502-48988879 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010842	pseudogene	Chr19:49680639-49681015 (+)
WSB/EiJ	MGP_WSBEiJ_G0011184	pseudogene	Chr19:51133309-51133685 (+)

Homology

• Gene Tree
  Rpl31-ps18
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000097719 (Evidence)
• NCBI Gene
  668536

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097719	Ensembl Gene Model | MGI Sequence Detail	377	C57BL/6J
transcript	ENSMUST00000180885	Ensembl | MGI Sequence Detail	377	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl31-ps18:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156929	Chr19:51780638-51780641 (+)	-24 bp