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Gm5407 Pseudogene Detail
Summary
  • Symbol
    Gm5407
  • Name
    predicted gene 5407
  • Feature Type
    pseudogene
  • IDs
    MGI:3644612
    NCBI Gene: 386061
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr16:49296651-49297898 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 30.83 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    63 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644612
pseudogene Chr16:49296397-49298601 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0022828
protein coding gene Chr16:44844249-44845031 (+)
AKR/J MGP_AKRJ_G0022811
protein coding gene Chr16:47600786-47601693 (-)
BALB/cJ MGP_BALBcJ_G0022829
protein coding gene Chr16:44894551-44895413 (+)
C3H/HeJ MGP_C3HHeJ_G0022593
protein coding gene Chr16:46435173-46435845 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023287
protein coding gene Chr16:49408358-49410301 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019834
protein coding gene Chr15:57453102-57453960 (-)
CAST/EiJ MGP_CASTEiJ_G0022118
protein coding gene Chr16:46685277-46685949 (+)
CBA/J MGP_CBAJ_G0022565
protein coding gene Chr16:49980092-49980714 (+)
DBA/2J MGP_DBA2J_G0022707
protein coding gene Chr16:45791068-45791975 (-)
FVB/NJ MGP_FVBNJ_G0031087
protein coding gene Chr6:124567275-124571011 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0019858
protein coding gene Chr12:106018552-106019098 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023302
protein coding gene Chr16:47625961-47626707 (-)
PWK/PhJ MGP_PWKPhJ_G0021749
protein coding gene Chr16:29739871-29750495 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014818
protein coding gene Chr1:30443758-30444363 (-)
WSB/EiJ no annotation



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000058176 Ensembl Gene Model | MGI Sequence Detail 1248 C57BL/6J ±  kb
transcript ENSMUST00000080694 Ensembl | MGI Sequence Detail 1248 Not Applicable  
For the selected sequence
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 5
  • Earliest
    J:23000 MGD Nomenclature Committee, 2/14/1995;
  • Latest
    J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory