Gm8731 Pseudogene Detail

Summary

• Symbol
  Gm8731
• Name
  predicted gene 8731

• Feature Type
  pseudogene
• IDs
  MGI:3644566
  NCBI Gene: 108168366
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:60912055-60912466 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 34.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644566	pseudogene	Chr18:60911978-60915748 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011451	pseudogene	Chr18:60610614-60611025 (-)
A/J	MGP_AJ_G0011452	pseudogene	Chr18:58012699-58013226 (-)
AKR/J	MGP_AKRJ_G0011416	pseudogene	Chr18:59609744-59610155 (-)
BALB/cJ	MGP_BALBcJ_G0011431	pseudogene	Chr18:58142202-58142613 (-)
C3H/HeJ	MGP_C3HHeJ_G0011316	pseudogene	Chr18:59846447-59846858 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009523	pseudogene	Chr11:18604253-18604657 (-)
CAST/EiJ	MGP_CASTEiJ_G0011119	pseudogene	Chr18:59710847-59711232 (-)
CBA/J	MGP_CBAJ_G0011291	pseudogene	Chr18:64280049-64280909 (-)
DBA/2J	MGP_DBA2J_G0011345	pseudogene	Chr18:57692206-57692617 (-)
FVB/NJ	MGP_FVBNJ_G0011351	pseudogene	Chr18:57098204-57098615 (-)
LP/J	MGP_LPJ_G0011414	pseudogene	Chr18:60465985-60466389 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011344	pseudogene	Chr18:65915393-65915804 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011706	pseudogene	Chr18:59811601-59812012 (-)
PWK/PhJ	MGP_PWKPhJ_G0010981	pseudogene	Chr18:57917224-57917635 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010802	pseudogene	Chr18:60047323-60047716 (-)
WSB/EiJ	MGP_WSBEiJ_G0011150	pseudogene	Chr18:59662197-59662608 (-)

Homology

• Gene Tree
  Gm8731
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000080779 (Evidence)
• NCBI Gene
  108168366

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080779	Ensembl Gene Model | MGI Sequence Detail	412	C57BL/6J
transcript	ENSMUST00000118088	Ensembl | MGI Sequence Detail	412	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8731:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153490	Chr18:60912521-60912524 (-)	-57 bp