Gm4984 Pseudogene Detail

Summary

• Symbol
  Gm4984
• Name
  predicted pseudogene 4984

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3644533
  NCBI Gene: 245347
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:12518542-12518901 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 7.49 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644533	pseudogene	ChrX:12518492-12519064 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014310	pseudogene	ChrX:7475507-7475866 (+)
A/J	MGP_AJ_G0014320	pseudogene	ChrX:7578706-7579065 (+)
AKR/J	MGP_AKRJ_G0014247	pseudogene	ChrX:7800580-7800939 (+)
BALB/cJ	MGP_BALBcJ_G0014268	pseudogene	ChrX:7431193-7431552 (+)
C3H/HeJ	MGP_C3HHeJ_G0014103	pseudogene	ChrX:7578317-7578676 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014728	pseudogene	ChrX:7666501-7666860 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012525	pseudogene	ChrX:6502783-6503142 (+)
CAST/EiJ	MGP_CASTEiJ_G0013743	pseudogene	ChrX:7325590-7325949 (+)
CBA/J	MGP_CBAJ_G0014088	pseudogene	ChrX:8060282-8060641 (+)
DBA/2J	MGP_DBA2J_G0014166	pseudogene	ChrX:7418762-7419121 (+)
FVB/NJ	MGP_FVBNJ_G0014165	pseudogene	ChrX:7252460-7252819 (+)
LP/J	MGP_LPJ_G0014262	pseudogene	ChrX:7664868-7665227 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014204	pseudogene	ChrX:7982904-7983263 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014697	pseudogene	ChrX:7400073-7400432 (+)
PWK/PhJ	MGP_PWKPhJ_G0013561	pseudogene	ChrX:6925575-6925934 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013350	pseudogene	ChrX:7494291-7494650 (+)
WSB/EiJ	MGP_WSBEiJ_G0013812	pseudogene	ChrX:7465508-7465867 (+)

Homology

• Gene Tree
  Gm4984
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000079871 (Evidence)
• NCBI Gene
  245347

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079871	Ensembl Gene Model | MGI Sequence Detail	360	C57BL/6J
transcript	ENSMUST00000115987	Ensembl | MGI Sequence Detail	360	Not Applicable
polypeptide	NP_001094954	RefSeq | MGI Sequence Detail	119	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2147884

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm4984:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160565	ChrX:12518477-12518480 (+)	-63 bp
Tssr160566	ChrX:12518487-12518501 (+)	-48 bp
Tssr160567	ChrX:12518511-12518525 (+)	-24 bp