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Trav3-1 Gene Detail
Summary
  • Symbol
    Trav3-1
  • Name
    T cell receptor alpha variable 3-1
  • Feature Type
    gene segment
  • IDs
    MGI:3644489
    NCBI Gene: 667441
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:52818219-52818670 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.00 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    22 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3644489
 gene segment Chr14:52818122-52818670 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002519
 gene segment Chr14:46649679-46650227 (+)
A/J MGP_AJ_G0002491
 gene segment Chr14:45424906-45425454 (+)
AKR/J MGP_AKRJ_G0002478
 gene segment Chr14:47076139-47076687 (+)
BALB/cJ MGP_BALBcJ_G0002487
 gene segment Chr14:45534424-45534972 (+)
C3H/HeJ MGP_C3HHeJ_G0002463
 gene segment Chr14:46844109-46844657 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002612
 gene segment Chr14:48707760-48708308 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002217
 gene segment Chr14:44554644-44555187 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0002454
 gene segment Chr14:50198633-50199181 (+)
DBA/2J MGP_DBA2J_G0002460
 gene segment Chr14:45195622-45196779 (+)
FVB/NJ MGP_FVBNJ_G0002474
 gene segment Chr14:44761414-44761962 (+)
LP/J MGP_LPJ_G0002515
 gene segment Chr14:47253802-47262046 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002444
 gene segment Chr14:49628701-49629249 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002608
 gene segment Chr14:46418207-46418755 (+)
PWK/PhJ MGP_PWKPhJ_G0002402
 gene segment Chr14:41948903-41949451 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002338
 gene segment Chr14:42462123-42462666 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV5, T cell receptor alpha variable 5
  • Vertebrate Orthologs
    10
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV5, T cell receptor alpha variable 5
  • Synonyms
    TCRAV15S1, TCRAV5S1
  • Links
    NCBI Gene ID: 28688
    UniProt: A0A0B4J249

  • Chr Location
    14q11.2; chr14:21749178-21749705 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 667441 NCBI Gene Model | MGI Sequence Detail 452 C57BL/6J ±  kb
polypeptide Q5R1I8 UniProt | EBI | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory