Gm5548 Pseudogene Detail

Summary

• Symbol
  Gm5548
• Name
  predicted pseudogene 5548

• Feature Type
  pseudogene
• IDs
  MGI:3644344
  NCBI Gene: 102632213
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:112961205-112961601 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 49.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3644344	pseudogene	Chr3:112959780-112961601 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012362	pseudogene	Chr3:114804581-114804977 (-)
A/J	MGP_AJ_G0012357	pseudogene	Chr3:111084097-111084493 (-)
AKR/J	MGP_AKRJ_G0012322	pseudogene	Chr3:113817083-113817479 (-)
BALB/cJ	MGP_BALBcJ_G0012340	pseudogene	Chr3:110897030-110897426 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012652	pseudogene	Chr3:119015143-119015539 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011969	pseudogene	Chr3:113682383-113682761 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012238	pseudogene	Chr3:110326657-110328699 (-)
FVB/NJ	MGP_FVBNJ_G0012241	pseudogene	Chr3:108067299-108067695 (-)
LP/J	MGP_LPJ_G0012308	pseudogene	Chr3:116350591-116350987 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012244	pseudogene	Chr3:129928979-129929375 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012657	pseudogene	Chr3:113465263-113465659 (-)
PWK/PhJ	MGP_PWKPhJ_G0011812	pseudogene	Chr3:110064187-110064583 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011628	pseudogene	Chr3:111700301-111700697 (-)
WSB/EiJ	MGP_WSBEiJ_G0012001	pseudogene	Chr3:114063781-114064177 (-)

Homology

• Gene Tree
  Gm5548
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5548
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000045952 (Evidence)
• NCBI Gene
  102632213

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045952	Ensembl Gene Model | MGI Sequence Detail	397	C57BL/6J
transcript	ENSMUST00000055878	Ensembl | MGI Sequence Detail	397	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426