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Gm5899 Pseudogene Detail
Summary
  • Symbol
    Gm5899
  • Name
    predicted pseudogene 5899
Location &
Maps
more
  • Sequence Map
    Chr7:93846417-93846686 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 51.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    50 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643908
 pseudogene Chr7:93846317-93846763 (+)
129S1/SvImJ MGP_129S1SvImJ_G0013958
 pseudogene Chr7:96738503-96738772 (+)
A/J MGP_AJ_G0013977
 pseudogene Chr7:94409248-94409517 (+)
AKR/J MGP_AKRJ_G0013911
 pseudogene Chr7:96638404-96638673 (+)
BALB/cJ MGP_BALBcJ_G0013934
 pseudogene Chr7:94058583-94058852 (+)
C3H/HeJ MGP_C3HHeJ_G0013769
 pseudogene Chr7:96976062-96976331 (+)
C57BL/6NJ MGP_C57BL6NJ_G0014366
 pseudogene Chr7:100541500-100541769 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0012214
 pseudogene Chr7:97020268-97020537 (+)
CAST/EiJ MGP_CASTEiJ_G0013427
 pseudogene Chr7:88463998-88464267 (+)
CBA/J MGP_CBAJ_G0013747
 pseudogene Chr7:103933338-103933607 (+)
DBA/2J MGP_DBA2J_G0013826
 pseudogene Chr7:92796514-92796783 (+)
FVB/NJ MGP_FVBNJ_G0013830
 pseudogene Chr7:92601946-92602215 (+)
LP/J MGP_LPJ_G0013901
 pseudogene Chr7:98046480-98046749 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0013855
 pseudogene Chr7:105291562-105291831 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0014327
 pseudogene Chr7:95949300-95949569 (+)
PWK/PhJ MGP_PWKPhJ_G0013241
 pseudogene Chr7:85809108-85809377 (+)
SPRET/EiJ MGP_SPRETEiJ_G0013006
 pseudogene Chr7:83220418-83220687 (+)
WSB/EiJ MGP_WSBEiJ_G0013488
 pseudogene Chr7:96611644-96611913 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    2
  • Genomic Mutations
    3 involving Gm5899
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096033 Ensembl Gene Model | MGI Sequence Detail 270 C57BL/6J ±  kb
transcript ENSMUST00000071770 Ensembl | MGI Sequence Detail 270 Not Applicable  
polypeptide XP_036009558 RefSeq | MGI Sequence Detail 95 C57BL/6J  
For the selected sequence
References
more
  • Summaries
    All 26
    Phenotypes 22
  • Earliest
    J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
  • Latest
    J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory