Gm5409
Pseudogene Detail

Symbol Name ID

Gm5409 predicted pseudogene 5409 MGI:3643903

BioType Conflict

Feature Type

pseudogene

Genetic Map

Chromosome 6

19.55 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr6:41416912-41419589 bp, + strand From VEGA annotation of GRCm38   2678 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:128234  Vertebrate Homology Class
2 mouse; 1 rhesus macaque

Protein SuperFamily: trypsin
Gene Tree: Gm5409

Expression

External Resources: GEO   ArrayExpress

Molecular reagents

All nucleic(2) Other(2)
Microarray probesets(1)

Other database links

VEGA Gene Model	OTTMUSG00000034255 (Evidence)
Ensembl Gene Model	ENSMUSG00000059014 (Evidence)
Entrez Gene	386551 (Evidence)
DoTS	DT.103589514
International Mouse Knockout Project Status	Gm5409

Sequences

Length	Strain/Species
genomic	OTTMUSG00000034255	VEGA Gene Model | MGI Sequence Detail	2678	C57BL/6J
transcript	OTTMUST00000087041	VEGA | MGI Sequence Detail	698	Not Applicable
polypeptide	NP_001003664	RefSeq | MGI Sequence Detail	246	C57BL/6

All sequences(14) RefSeq(3) UniProt(1)

Polymorphisms

SNPs(29 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001254	Peptidase S1
InterPro	IPR001314	Peptidase S1A, chymotrypsin-type
InterPro	IPR018114	Peptidase S1, trypsin family, active site
InterPro	IPR009003	Trypsin-like cysteine/serine peptidase domain

References

(Earliest) J:23000 MGD Nomenclature Committee, 2/14/1995;
(Latest) J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;
All references(9)