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Gm5409 Pseudogene Detail
Summary
  • Symbol
    Gm5409
  • Name
    predicted pseudogene 5409
  • Feature Type
    pseudogene
  • IDs
    MGI:3643903
    NCBI Gene: 386551
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr6:41416912-41419589 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 19.55 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    28 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643903
pseudogene Chr6:41415307-41419593 (+)
129S1/SvImJ MGP_129S1SvImJ_G0040430
pseudogene Chr6:39853714-39859967 (+)
A/J MGP_AJ_G0040412
pseudogene Chr6:38176304-38179161 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0040418
pseudogene Chr6:38397519-38401070 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0039102
pseudogene Chr6:39246891-39249789 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0040159
pseudogene Chr6:37673532-37676223 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0040151
pseudogene Chr6:44833623-44867151 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0041107
pseudogene Chr6:39298254-39301374 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0038493
pseudogene Chr6:39005698-39010880 (+)
WSB/EiJ no annotation



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000059014 Ensembl Gene Model | MGI Sequence Detail 2678 C57BL/6J ±  kb
transcript ENSMUST00000160346 Ensembl | MGI Sequence Detail 698 Not Applicable  
polypeptide Q7M754 UniProt | EBI | MGI Sequence Detail 246 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR001314 Peptidase S1A, chymotrypsin family
    IPR009003 Peptidase S1, PA clan
    IPR001254 Serine proteases, trypsin domain
    IPR018114 Serine proteases, trypsin family, histidine active site
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 7
  • Earliest
    J:84749 Puente XS, et al., Human and mouse proteases: a comparative genomic approach. Nat Rev Genet. 2003 Jul;4(7):544-58

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/30/2020
MGI 6.15
The Jackson Laboratory