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Gm5409
Pseudogene Detail
Symbol

Name
ID
Gm5409
predicted pseudogene 5409
MGI:3643903
BioType Conflict
Feature Type
pseudogene
Genetic Map
Chromosome 6
19.55 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr6:41416912-41419589 bp, + strand
From VEGA annotation of GRCm38

  2678 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
Protein SuperFamily: trypsin
Gene Tree: Gm5409
Expression
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(2) Other(2)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000034255 (Evidence)
Ensembl Gene ModelENSMUSG00000059014 (Evidence)
Entrez Gene386551 (Evidence)
DoTSDT.103589514
International Mouse Knockout Project StatusGm5409
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034255 VEGA Gene Model | MGI Sequence Detail 2678 C57BL/6J ±  kb
transcript OTTMUST00000087041 VEGA | MGI Sequence Detail 698 Not Applicable 
polypeptide NP_001003664 RefSeq | MGI Sequence Detail 246 C57BL/6 

For the selected sequences
All sequences(14) RefSeq(3) UniProt(1)
Polymorphisms
SNPs within 2kb(29 from dbSNP Build 137)    SNPs within 2kb including multiple locations(37)
Protein-related
information
ResourceIDDescription
InterPro IPR001254 Peptidase S1
InterPro IPR001314 Peptidase S1A, chymotrypsin-type
InterPro IPR018114 Peptidase S1, trypsin family, active site
InterPro IPR009003 Trypsin-like cysteine/serine peptidase domain
References
(Earliest) J:23000 MGD Nomenclature Committee, 2/14/1995;
(Latest) J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;
All references(9)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory