Gm6789 Pseudogene Detail

Summary

• Symbol
  Gm6789
• Name
  predicted gene 6789

• Feature Type
  pseudogene
• IDs
  MGI:3643581
  NCBI Gene: 627792
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:63676822-63678206 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 37.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643581	pseudogene	Chr18:63676505-63678275 (-)
129S1/SvImJ	ENSMUSG00200025570	pseudogene	Chr18:60856761-60858145 (-)
A/J	ENSMUSG00195034357	pseudogene	Chr18:60915919-60917303 (-)
AKR/J	ENSMUSG00220022836	pseudogene	Chr18:60879699-60881083 (-)
BALB/cJ	ENSMUSG00180012622	pseudogene	Chr18:61482880-61484264 (-)
C3H/HeJ	ENSMUSG00175010808	pseudogene	Chr18:61087339-61088723 (-)
C57BL/6NJ	ENSMUSG00215040006	pseudogene	Chr18:60415473-60416857 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028335	pseudogene	Chr18:60081280-60082668 (-)
CBA/J	ENSMUSG00210031322	pseudogene	Chr18:61045379-61046763 (-)
DBA/2J	ENSMUSG00185029806	pseudogene	Chr18:60942919-60944303 (-)
FVB/NJ	ENSMUSG00205013293	pseudogene	Chr18:60412400-60413784 (-)
JF1/MsJ	ENSUMUG00000042129	pseudogene	Chr18:60812611-60813995 (-)
LP/J	ENSMUSG00230039893	pseudogene	Chr18:62997367-62998751 (-)
NOD/ShiLtJ	ENSMUSG00190008556	pseudogene	Chr18:60678761-60680145 (-)
NZO/HlLtJ	ENSMUSG00225030762	pseudogene	Chr18:62881523-62882907 (-)
PWK/PhJ	ENSLUMG00010027562	pseudogene	Chr18:61226259-61227643 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005009369	pseudogene	Chr18:60473575-60474959 (-)

Homology

• Gene Tree
  Gm6789
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000117875 (Evidence)
• NCBI Gene
  627792

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117875	Ensembl Gene Model | MGI Sequence Detail	1385	C57BL/6J
transcript	ENSMUST00000237314	Ensembl | MGI Sequence Detail	1385	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6789:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153640	Chr18:63678267-63678277 (-)	-66 bp