Obox6-ps1 Pseudogene Detail

Summary

• Symbol
  Obox6-ps1
• Name
  oocyte specific homeobox 6, pseudogene 1
• Synonyms
  Gm5496

• Feature Type
  pseudogene
• IDs
  MGI:3643552
  NCBI Gene: 433129
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:61667568-61668609 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 31.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643552	pseudogene	Chr17:61667567-61668610 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011384	pseudogene	Chr17:63280143-63281184 (+)
A/J	MGP_AJ_G0011377	pseudogene	Chr17:61464999-61466040 (+)
AKR/J	MGP_AKRJ_G0011342	pseudogene	Chr17:62288686-62289727 (+)
BALB/cJ	MGP_BALBcJ_G0011358	pseudogene	Chr17:61353720-61354761 (+)
C3H/HeJ	MGP_C3HHeJ_G0011243	pseudogene	Chr17:63105912-63106953 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011649	pseudogene	Chr17:65727354-65728395 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012112	pseudogene	Chr7:14855963-14857444 (-)
CAST/EiJ	MGP_CASTEiJ_G0011055	pseudogene	Chr17:63384040-63385082 (+)
CBA/J	MGP_CBAJ_G0011224	pseudogene	Chr17:68360746-68361787 (+)
DBA/2J	MGP_DBA2J_G0011275	pseudogene	Chr17:60233062-60234103 (+)
FVB/NJ	MGP_FVBNJ_G0011276	pseudogene	Chr17:59724263-59725304 (+)
LP/J	MGP_LPJ_G0011346	pseudogene	Chr17:64007438-64008479 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011270	pseudogene	Chr17:68341824-68342865 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011630	pseudogene	Chr17:62715552-62716593 (+)
PWK/PhJ	MGP_PWKPhJ_G0010923	pseudogene	Chr17:59466053-59473758 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010743	pseudogene	Chr17:59397168-59398209 (+)
WSB/EiJ	MGP_WSBEiJ_G0011092	pseudogene	Chr17:63348107-63349148 (+)

Homology

• Gene Tree
  Obox6-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000093761 (Evidence)
• NCBI Gene
  433129

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093761	Ensembl Gene Model | MGI Sequence Detail	1042	C57BL/6J
transcript	ENSMUST00000176658	Ensembl | MGI Sequence Detail	1042	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;