Gm6020 Gene Detail

Summary

• Symbol
  Gm6020
• Name
  predicted gene 6020

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3643428
  NCBI Gene: 547091
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:61140302-61173096 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 56.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  541 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643428	protein coding gene	Chr19:61140302-61173096 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0023066	protein coding gene	Chr16:94828130-94828363 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0023068	protein coding gene	Chr16:95378121-95378354 (-)
C3H/HeJ	MGP_C3HHeJ_G0022829	protein coding gene	Chr16:98218123-98218356 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0025715	protein coding gene	Chr19:63259613-63259678 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0022932	protein coding gene	Chr16:94641048-94641281 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0023001	protein coding gene	Chr16:99188611-99188844 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022926	protein coding gene	Chr16:111160545-111160778 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025773	protein coding gene	Chr19:60875297-60875362 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1
• UniProt
  1

• NCBI Gene
  547091

Representative Sequences			Length	Strain/Species
genomic	547091	NCBI Gene Model | MGI Sequence Detail	32795	C57BL/6J
transcript	AB010317	GenBank | ENA | DDBJ | MGI Sequence Detail	68	ZRU/MplStud
polypeptide	O88222	UniProt | EBI | MGI Sequence Detail	22	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:48249 Agata Y, et al., Rapid and efficient cloning of cDNAs encoding Kruppel-like zinc finger proteins by degenerate PCR. Gene. 1998 Jun 15;213(1-2):55-64

TSS for Gm6020:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157371	Chr19:61140276-61140309 (+)	-9 bp
Tssr157373	Chr19:61164536-61164560 (+)	24,246 bp