Gm5248 Pseudogene Detail

Summary

• Symbol
  Gm5248
• Name
  predicted gene 5248

• Feature Type
  pseudogene
• IDs
  MGI:3643322
  NCBI Gene: 383464
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:35029362-35030077 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 29.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643322	pseudogene	Chr19:35029230-35030144 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005827	lincRNA gene	Chr19:33846094-33850139 (-)
A/J	MGP_AJ_G0005819	lincRNA gene	Chr19:32211024-32215043 (-)
AKR/J	MGP_AKRJ_G0005794	lincRNA gene	Chr19:33312846-33316879 (-)
BALB/cJ	MGP_BALBcJ_G0005798	lincRNA gene	Chr19:32323131-32327172 (-)
C3H/HeJ	MGP_C3HHeJ_G0005745	lincRNA gene	Chr19:33391447-33395482 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005958	lincRNA gene	Chr19:34846102-34850145 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005298	lincRNA gene	Chr19:31612397-31616488 (-)
CAST/EiJ	MGP_CASTEiJ_G0005683	lincRNA gene	Chr19:33160206-33164232 (-)
CBA/J	MGP_CBAJ_G0005730	lincRNA gene	Chr19:36471147-36475180 (-)
DBA/2J	MGP_DBA2J_G0005751	lincRNA gene	Chr19:32099178-32103223 (-)
FVB/NJ	MGP_FVBNJ_G0005777	lincRNA gene	Chr19:31921456-31925729 (-)
LP/J	MGP_LPJ_G0005831	lincRNA gene	Chr19:33958831-33962878 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005764	lincRNA gene	Chr19:36241118-36245163 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005955	lincRNA gene	Chr19:33394964-33399309 (-)
PWK/PhJ	MGP_PWKPhJ_G0005631	lincRNA gene	Chr19:31918160-31922235 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005545	lincRNA gene	Chr19:32267303-32271332 (-)
WSB/EiJ	MGP_WSBEiJ_G0005737	lincRNA gene	Chr19:33470968-33475003 (-)

Homology

• Gene Tree
  Gm5248
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101966 (Evidence)
• NCBI Gene
  383464

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101966	Ensembl Gene Model | MGI Sequence Detail	716	C57BL/6J
transcript	ENSMUST00000186108	Ensembl | MGI Sequence Detail	716	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;