Gm4971 Pseudogene Detail

Summary

• Symbol
  Gm4971
• Name
  predicted gene 4971

• Feature Type
  pseudogene
• IDs
  MGI:3643321
  NCBI Gene: 244061
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:73335240-73336311 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 42.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3643321	pseudogene	Chr7:73335240-73336349 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010915	pseudogene	Chr12:56402913-56404026 (-)
AKR/J	MGP_AKRJ_G0010870	pseudogene	Chr12:58190575-58191804 (-)
BALB/cJ	MGP_BALBcJ_G0010891	pseudogene	Chr12:56770871-56772088 (-)
C3H/HeJ	MGP_C3HHeJ_G0013741	pseudogene	Chr7:75872363-75873470 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014340	pseudogene	Chr7:78361026-78362631 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010762	pseudogene	Chr12:62475488-62476715 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013801	pseudogene	Chr7:72278169-72279285 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013827	pseudogene	Chr7:81060333-81061449 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4971
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm4971
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000108337 (Evidence)
• NCBI Gene
  244061

Representative Sequences			Length	Strain/Species
genomic	244061	NCBI Gene Model | MGI Sequence Detail	1072	C57BL/6J
transcript	NR_033604	RefSeq | MGI Sequence Detail	1072	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm4971:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72974	Chr7:73336344-73336348 (-)	-35 bp