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Clca4c-ps Pseudogene Detail
Summary
  • Symbol
    Clca4c-ps
  • Name
    chloride channel accessory 4C, pseudogene
  • Synonyms
    Clca4c, Gm18718, Gm6289
Location &
Maps
more
  • Sequence Map
    Chr3:144585083-144601772 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 69.18 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643218
 pseudogene Chr3:144585083-144601772 (-)
129S1/SvImJ MGP_129S1SvImJ_G0039824
 pseudogene Chr3:148228830-148253348 (-)
A/J MGP_AJ_G0039825
 pseudogene Chr3:142970057-143005542 (-)
AKR/J MGP_AKRJ_G0039751
 pseudogene Chr3:146742369-146788725 (-)
BALB/cJ MGP_BALBcJ_G0039796
 pseudogene Chr3:142796077-142808263 (-)
C3H/HeJ MGP_C3HHeJ_G0039451
 pseudogene Chr3:147119654-147154215 (-)
C57BL/6NJ MGP_C57BL6NJ_G0040365
 pseudogene Chr3:153327215-153365809 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036972
 pseudogene Chr3:138193993-138198882 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0039421
 pseudogene Chr3:158599558-158647291 (-)
DBA/2J MGP_DBA2J_G0039622
 pseudogene Chr3:142121765-142152693 (-)
FVB/NJ MGP_FVBNJ_G0039579
 pseudogene Chr3:139543712-139567055 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0039579
 pseudogene Chr3:166929470-166983983 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0040467
 pseudogene Chr3:146350612-146381300 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 622139 NCBI Gene Model | MGI Sequence Detail 16690 C57BL/6J ±  kb
transcript NR_126537 RefSeq | MGI Sequence Detail 712 C57BL/6  
polypeptide Q3UTT3 UniProt | EBI | MGI Sequence Detail 156 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR013642 Calcium-activated chloride channel, N-terminal
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:5010903
References
more
  • Summaries
    All 12
    Diseases 1
    Phenotypes 2
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory