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Gm9866 Gene Detail
Summary
  • Symbol
    Gm9866
  • Name
    predicted gene 9866
  • Synonyms
    EG636791
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3643118
    NCBI Gene: 636791
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:27140796-27160516 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 9.86 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    251 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643118
lncRNA gene Chr12:27050950-27160633 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005349
lincRNA gene Chr12:24904784-24924624 (-)
A/J MGP_AJ_G0005332
lincRNA gene Chr12:24252614-24272556 (-)
AKR/J MGP_AKRJ_G0005312
lincRNA gene Chr12:25023574-25044836 (-)
BALB/cJ MGP_BALBcJ_G0005314
lincRNA gene Chr12:24502912-24522766 (-)
C3H/HeJ MGP_C3HHeJ_G0005263
lincRNA gene Chr12:24932440-24953022 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005468
lincRNA gene Chr12:25719126-25739089 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004855
lincRNA gene Chr12:23665817-23685775 (-)
CAST/EiJ MGP_CASTEiJ_G0005210
lincRNA gene Chr12:19910116-19930013 (-)
CBA/J MGP_CBAJ_G0005252
lincRNA gene Chr12:26571364-26591189 (-)
DBA/2J MGP_DBA2J_G0005270
lincRNA gene Chr12:24095820-24115600 (-)
FVB/NJ MGP_FVBNJ_G0005295
lincRNA gene Chr12:23949433-23969168 (-)
LP/J MGP_LPJ_G0005351
lincRNA gene Chr12:24991054-25010842 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005277
lincRNA gene Chr12:26269150-26289139 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005470
lincRNA gene Chr12:24591730-24611539 (-)
PWK/PhJ MGP_PWKPhJ_G0005159
lincRNA gene Chr12:18834374-18854395 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005079
lincRNA gene Chr12:19091010-19111922 (-)
WSB/EiJ MGP_WSBEiJ_G0005258
lincRNA gene Chr12:24795826-24815615 (-)



Homology
more
  • Human Ortholog
    SILC1, sciatic injury induced lincRNA upregulator of SOX11
  • Human Ortholog
    SILC1, sciatic injury induced lincRNA upregulator of SOX11
    Orthology source: HGNC
  • Synonyms
    LINC01105
  • Links
    NCBI Gene ID: 150622

  • Chr Location
    2p25.2; chr2:5932687-5980218 (+)  GRCh38.p7

  • HCOP
    human homology predictions: SILC1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 636791 NCBI Gene Model | MGI Sequence Detail 19721 C57BL/6J ±  kb
transcript NR_045868 RefSeq | MGI Sequence Detail 2087 C57BL/6  
polypeptide Q8C8T9 UniProt | EBI | MGI Sequence Detail 161 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 15
    Phenotypes 2
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory