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Pabpc4l Gene Detail
Summary
  • Symbol
    Pabpc4l
  • Name
    poly(A) binding protein, cytoplasmic 4-like
  • Synonyms
    C330050A14Rik, EG241989
  • Feature Type
    protein coding gene
  • IDs
    MGI:3643087
    NCBI Gene: 241989
  • Gene Overview
    MyGene.info: PABPC4L
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:46442197-46448219 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 20.74 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3643087
protein coding gene Chr3:46440854-46448219 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027190
protein coding gene Chr3:44668020-44674041 (-)
A/J MGP_AJ_G0027150
protein coding gene Chr3:43467109-43473557 (-)
AKR/J MGP_AKRJ_G0027119
protein coding gene Chr3:44321566-44327592 (-)
BALB/cJ MGP_BALBcJ_G0027162
protein coding gene Chr3:43319140-43325298 (-)
C3H/HeJ MGP_C3HHeJ_G0026905
protein coding gene Chr3:44477036-44483058 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027608
protein coding gene Chr3:46507702-46513723 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024968
protein coding gene Chr3:40505519-40511523 (-)
CAST/EiJ MGP_CASTEiJ_G0026358
protein coding gene Chr3:44429005-44434917 (-)
CBA/J MGP_CBAJ_G0026882
protein coding gene Chr3:47872082-47878094 (-)
DBA/2J MGP_DBA2J_G0027016
protein coding gene Chr3:43076805-43082797 (-)
FVB/NJ MGP_FVBNJ_G0026984
protein coding gene Chr3:42205908-42211931 (-)
LP/J MGP_LPJ_G0027128
protein coding gene Chr3:45407033-45413044 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027002
protein coding gene Chr3:51380504-51388391 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027667
protein coding gene Chr3:44225779-44231802 (-)
PWK/PhJ MGP_PWKPhJ_G0026090
protein coding gene Chr3:42611651-42617702 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025903
protein coding gene Chr3:43829381-43836312 (-)
WSB/EiJ MGP_WSBEiJ_G0026432
protein coding gene Chr3:44269312-44275315 (-)



Homology
more
  • Human Ortholog
    PABPC4L, poly(A) binding protein cytoplasmic 4 like
  • Vertebrate Orthologs
    6
  • Human Ortholog
    PABPC4L, poly(A) binding protein cytoplasmic 4 like
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 132430
    UniProt: P0CB38

  • Chr Location
    4q28.3; chr4:133948459-134201748 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090919 Ensembl Gene Model | MGI Sequence Detail 6023 C57BL/6J ±  kb
transcript ENSMUST00000192793 Ensembl | MGI Sequence Detail 5252 Not Applicable  
polypeptide ENSMUSP00000141300 Ensembl | MGI Sequence Detail 370 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    3 Sequences
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
    IPR003954 RNA recognition motif domain, eukaryote
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
Other
Accession IDs
less
MGI:1925954
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory