Gm11149 Gene Detail

Summary

• Symbol
  Gm11149
• Name
  predicted gene 11149

• Feature Type
  lncRNA gene
• IDs
  MGI:3642683
  NCBI Gene: 100036537
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:49429588-49479325 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 26.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1197 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642683	lncRNA gene	Chr9:49429574-49483891 (+)
129S1/SvImJ	ENSMUSG00200019058	lncRNA gene	Chr9:46598442-46652746 (+)
129S1/SvImJ	ENSMUSG00200017721	protein coding gene	Chr9:46646939-46652699 (+)
A/J	ENSMUSG00195024981	lncRNA gene	Chr9:46290123-46343998 (+)
AKR/J	ENSMUSG00220030618	protein coding gene	Chr9:46433528-46439288 (+)
AKR/J	ENSMUSG00220041849	lncRNA gene	Chr9:46385008-46439335 (+)
BALB/cJ	ENSMUSG00180033195	lncRNA gene	Chr9:46401555-46455418 (+)
C3H/HeJ	ENSMUSG00175015820	lncRNA gene	Chr9:46413611-46467479 (+)
C57BL/6NJ	ENSMUSG00215034804	protein coding gene	Chr9:46403896-46409656 (+)
C57BL/6NJ	ENSMUSG00215036647	lncRNA gene	Chr9:46355390-46409703 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032181	protein coding gene	Chr9:46390409-46434895 (+)
CAST/EiJ	ENSTCUG00005015912	lncRNA gene	Chr9:46332771-46386728 (+)
CBA/J	ENSMUSG00210015615	protein coding gene	Chr9:46528342-46534102 (+)
CBA/J	ENSMUSG00210016944	lncRNA gene	Chr9:46479845-46534149 (+)
DBA/2J	ENSMUSG00185012266	lncRNA gene	Chr9:46527813-46581682 (+)
FVB/NJ	ENSMUSG00205037270	protein coding gene	Chr9:46802373-46808150 (+)
FVB/NJ	ENSMUSG00205044778	lncRNA gene	Chr9:46753873-46808197 (+)
JF1/MsJ	ENSUMUG00000042721	lncRNA gene	Chr9:46574140-46628063 (+)
LP/J	ENSMUSG00230041991	lncRNA gene	Chr9:46814376-46868674 (+)
LP/J	ENSMUSG00230037727	protein coding gene	Chr9:46862867-46868627 (+)
NOD/ShiLtJ	ENSMUSG00190019954	protein coding gene	Chr9:46655966-46661743 (+)
NOD/ShiLtJ	ENSMUSG00190027856	lncRNA gene	Chr9:46607442-46661790 (+)
NZO/HlLtJ	ENSMUSG00225044786	lncRNA gene	Chr9:46776470-46830771 (+)
NZO/HlLtJ	ENSMUSG00225043110	protein coding gene	Chr9:46824964-46830724 (+)
PWK/PhJ	ENSLUMG00010021982	lncRNA gene	Chr9:46540757-46595079 (+)
SPRET/EiJ	ENSMSPG00010011514	lncRNA gene	Chr9:47353389-47406814 (+)
WSB/EiJ	ENSIUOG00005023177	lncRNA gene	Chr9:46013352-46067306 (+)

Homology

• Gene Tree
  Gm11149
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000079564 (Evidence)
• NCBI Gene
  100036537

Representative Sequences			Length	Strain/Species
genomic	100036537	NCBI Gene Model | MGI Sequence Detail	49738	C57BL/6J
transcript	NR_029465	RefSeq | MGI Sequence Detail	1275	C57BL/6
polypeptide	Q9D3T0	UniProt | EBI | MGI Sequence Detail	167	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm11149:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85015	Chr9:49429612-49429632 (+)	34 bp
Tssr85016	Chr9:49429637-49429640 (+)	51 bp
Tssr85017	Chr9:49470525-49470528 (+)	40,939 bp