Rpl30-ps6 Pseudogene Detail

Summary

• Symbol
  Rpl30-ps6
• Name
  ribosomal protein L30, pseudogene 6
• Synonyms
  Gm10200

• Feature Type
  pseudogene
• IDs
  MGI:3642608
  NCBI Gene: 100040414
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:86401381-86401728 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642608	pseudogene	Chr1:86401284-86401742 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010231	pseudogene	Chr1:87746129-87746476 (+)
A/J	MGP_AJ_G0010226	pseudogene	Chr1:84485337-84485684 (+)
AKR/J	MGP_AKRJ_G0010197	pseudogene	Chr1:86961082-86962065 (+)
BALB/cJ	MGP_BALBcJ_G0010201	pseudogene	Chr1:84606664-84607011 (+)
C3H/HeJ	MGP_C3HHeJ_G0010139	pseudogene	Chr1:87196864-87197211 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010460	pseudogene	Chr1:91083585-91083932 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009190	pseudogene	Chr1:78973791-78974136 (+)
CAST/EiJ	MGP_CASTEiJ_G0009966	pseudogene	Chr1:86435928-86436272 (+)
CBA/J	MGP_CBAJ_G0010107	pseudogene	Chr1:93911238-93911585 (+)
DBA/2J	MGP_DBA2J_G0010139	pseudogene	Chr1:83798960-83799307 (+)
FVB/NJ	MGP_FVBNJ_G0010159	pseudogene	Chr1:82851190-82851537 (+)
LP/J	MGP_LPJ_G0010220	pseudogene	Chr1:88843729-88844076 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010119	pseudogene	Chr1:97172536-97172883 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010436	pseudogene	Chr1:87079098-87079445 (+)
PWK/PhJ	MGP_PWKPhJ_G0009870	pseudogene	Chr1:83081501-83081848 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009687	pseudogene	Chr1:86031038-86031371 (+)
WSB/EiJ	MGP_WSBEiJ_G0010030	pseudogene	Chr1:86723933-86724280 (+)

Homology

• Gene Tree
  Rpl30-ps6
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl30-ps6
• Find Mice (IMSR)
  12 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101328 (Evidence)
• NCBI Gene
  100040414

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101328	Ensembl Gene Model | MGI Sequence Detail	348	C57BL/6J
transcript	ENSMUST00000163337	Ensembl | MGI Sequence Detail	348	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Rpl30-ps6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7757	Chr1:86401249-86401290 (+)	-111 bp