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H2afb1 Gene Detail
Summary
  • Symbol
    H2afb1
  • Name
    H2A histone family member B1
  • Synonyms
    ENSMUSG00000067441, H2A.Bbd1
  • Feature Type
    protein coding gene
  • IDs
    MGI:3642445
    NCBI Gene: 100039319
  • Alliance
Location &
Maps
more
  • Sequence Map
    ChrX:117014757-117015104 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 49.58 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    42 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642445
protein coding gene ChrX:117014757-117015104 (.)
129S1/SvImJ MGP_129S1SvImJ_G0036046
protein coding gene ChrX:117191030-117191597 (-)
A/J MGP_AJ_G0036021
protein coding gene ChrX:112757812-112758158 (+)
AKR/J MGP_AKRJ_G0035945
protein coding gene ChrX:120615373-120615975 (-)
BALB/cJ MGP_BALBcJ_G0036013
protein coding gene ChrX:111251938-111252284 (+)
C3H/HeJ MGP_C3HHeJ_G0035719
protein coding gene ChrX:114186888-114187360 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036537
protein coding gene ChrX:116314091-116314437 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033369
protein coding gene ChrX:112963695-112964410 (-)
CAST/EiJ MGP_CASTEiJ_G0035007
protein coding gene ChrX:97914262-97914819 (-)
CBA/J MGP_CBAJ_G0035696
protein coding gene ChrX:120875391-120875893 (+)
DBA/2J MGP_DBA2J_G0035851
protein coding gene ChrX:116147450-116148052 (-)
FVB/NJ MGP_FVBNJ_G0035789
protein coding gene ChrX:111392581-111392927 (+)
LP/J MGP_LPJ_G0035945
protein coding gene ChrX:118066365-118066952 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035818
protein coding gene ChrX:125728816-125729162 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036564
protein coding gene ChrX:112514911-112515257 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0034530
protein coding gene ChrX:97935905-97936249 (+)
WSB/EiJ MGP_WSBEiJ_G0035142
protein coding gene ChrX:111237334-111237680 (+)



Homology
more
  • Human Ortholog
    H2AFB1, H2A histone family member B1
  • Vertebrate Orthologs
    12
  • Human Ortholog
    H2AFB1, H2A histone family member B1
    Orthology source: HomoloGene
  • Synonyms
    H2A.B, H2A.Bbd
  • Links
    NCBI Gene ID: 474382
    neXtProt AC: NX_P0C5Y9
    UniProt: P0C5Y9

  • Chr Location
    Xq28; chrX:154885042-154885558 (+)  GRCh38.p7

  • Human Ortholog
    H2AFB2, H2A histone family member B2
    Orthology source: HomoloGene
  • Synonyms
    H2A.Bbd
  • Links
    NCBI Gene ID: 474381
    neXtProt AC: NX_P0C5Z0
    UniProt: P0C5Z0

  • Chr Location
    Xq28; chrX:155380706-155381299 (+)  GRCh38.p7

  • Human Ortholog
    H2AFB3, H2A histone family member B3
    Orthology source: HomoloGene
  • Synonyms
    H2ABBD, H2AFB
  • Links
    NCBI Gene ID: 83740
    neXtProt AC: NX_P0C5Z0
    UniProt: P0C5Z0

  • Chr Location
    Xq28; chrX:155459419-155459935 (-)  GRCh38.p7

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100039319 NCBI Gene Model | MGI Sequence Detail 348 C57BL/6J ±  kb
transcript NM_001102665 RefSeq | MGI Sequence Detail 348 Not Specified  
polypeptide NP_001096135 RefSeq | MGI Sequence Detail 115 Not Specified  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Gene Ontology 3
  • Earliest
    J:173007 Ishibashi T, et al., H2A.Bbd: an X-chromosome-encoded histone involved in mammalian spermiogenesis. Nucleic Acids Res. 2010 Apr;38(6):1780-9
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory