Gm9961 Gene Detail

Summary

• Symbol
  Gm9961
• Name
  predicted gene 9961

• Feature Type
  lncRNA gene
• IDs
  MGI:3642444
  NCBI Gene: 791359
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:11719228-11748458 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 6.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  894 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642444	lncRNA gene	Chr16:11719214-11748464 (+)
129S1/SvImJ	ENSMUSG00200012238	lncRNA gene	Chr16:8707856-8737095 (+)
129S1/SvImJ	ENSMUSG00200009532	protein coding gene	Chr16:8707902-8801773 (+)
A/J	ENSMUSG00195011539	protein coding gene	Chr16:8263532-8292948 (+)
A/J	ENSMUSG00195011769	lncRNA gene	Chr16:8263486-8292725 (+)
AKR/J	ENSMUSG00220017577	lncRNA gene	Chr16:8552500-8581737 (+)
AKR/J	ENSMUSG00220017038	protein coding gene	Chr16:8552546-8581960 (+)
BALB/cJ	ENSMUSG00180008982	lncRNA gene	Chr16:8502707-8531937 (+)
BALB/cJ	ENSMUSG00180007991	protein coding gene	Chr16:8502753-8532160 (+)
C3H/HeJ	ENSMUSG00175030657	lncRNA gene	Chr16:8679758-8708981 (+)
C3H/HeJ	ENSMUSG00175027201	protein coding gene	Chr16:8679804-8709204 (+)
C57BL/6NJ	ENSMUSG00215015045	protein coding gene	Chr16:8377909-8407324 (+)
C57BL/6NJ	ENSMUSG00215023285	lncRNA gene	Chr16:8377863-8407101 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020462	protein coding gene	Chr16:8474359-8503398 (+)
CAST/EiJ	ENSTCUG00005032977	lncRNA gene	Chr16:8613015-8642257 (+)
CBA/J	ENSMUSG00210011211	protein coding gene	Chr16:8696845-8726245 (+)
CBA/J	ENSMUSG00210012267	lncRNA gene	Chr16:8696799-8726022 (+)
DBA/2J	ENSMUSG00185009434	protein coding gene	Chr16:8642278-8671678 (+)
DBA/2J	ENSMUSG00185010700	lncRNA gene	Chr16:8642232-8671455 (+)
FVB/NJ	ENSMUSG00205011988	protein coding gene	Chr16:8619964-8649384 (+)
FVB/NJ	ENSMUSG00205014258	lncRNA gene	Chr16:8619918-8649161 (+)
JF1/MsJ	ENSUMUG00000039778	lncRNA gene	Chr16:8771147-8799286 (+)
LP/J	ENSMUSG00230045236	protein coding gene	Chr16:11203648-11297514 (+)
LP/J	ENSMUSG00230046581	lncRNA gene	Chr16:11203602-11232834 (+)
NOD/ShiLtJ	ENSMUSG00190028244	lncRNA gene	Chr16:8755408-8784641 (+)
NOD/ShiLtJ	ENSMUSG00190024453	protein coding gene	Chr16:8755454-8784864 (+)
NZO/HlLtJ	ENSMUSG00225032385	lncRNA gene	Chr16:14439352-14468595 (+)
NZO/HlLtJ	ENSMUSG00225030800	protein coding gene	Chr16:14439398-14468818 (+)
PWK/PhJ	ENSLUMG00010018092	lncRNA gene	Chr16:8625967-8654096 (+)
SPRET/EiJ	ENSMSPG00010017927	lncRNA gene	Chr16:8586060-8615158 (+)
WSB/EiJ	ENSIUOG00005017030	lncRNA gene	Chr16:8701335-8730645 (+)

Homology

• Gene Tree
  Gm9961
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  2
• Targeted
  2
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055015 (Evidence)
• NCBI Gene
  791359

Representative Sequences			Length	Strain/Species
genomic	791359	NCBI Gene Model | MGI Sequence Detail	29231	C57BL/6J
transcript	NR_033509	RefSeq | MGI Sequence Detail	540	C57BL/6
polypeptide	Q8BNV2	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42