C630004M23Rik Gene Detail

Summary

• Symbol
  C630004M23Rik
• Name
  RIKEN cDNA C630004M23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3642399
  NCBI Gene: 791351
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:10052649-10054330 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642399	lncRNA gene	Chr2:10052649-10054330 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000976	unclassified gene	Chr2:7400174-7401855 (+)
A/J	MGP_AJ_G0000953	unclassified gene	Chr2:7066346-7068027 (+)
AKR/J	MGP_AKRJ_G0000940	unclassified gene	Chr2:7286972-7288653 (+)
BALB/cJ	MGP_BALBcJ_G0000945	unclassified gene	Chr2:7068385-7070066 (+)
C3H/HeJ	MGP_C3HHeJ_G0000929	unclassified gene	Chr2:7244173-7245854 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001061	unclassified gene	Chr2:7588820-7590501 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000793	unclassified gene	Chr2:6580184-6581861 (+)
CAST/EiJ	MGP_CASTEiJ_G0000920	unclassified gene	Chr2:7273456-7275133 (+)
CBA/J	MGP_CBAJ_G0000921	unclassified gene	Chr2:7896146-7897827 (+)
DBA/2J	MGP_DBA2J_G0000925	unclassified gene	Chr2:6998892-7000573 (+)
FVB/NJ	MGP_FVBNJ_G0000936	unclassified gene	Chr2:6939736-6941417 (+)
LP/J	MGP_LPJ_G0000979	unclassified gene	Chr2:7273401-7275082 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000926	unclassified gene	Chr2:7878803-7880484 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001053	unclassified gene	Chr2:7244376-7246057 (+)
PWK/PhJ	MGP_PWKPhJ_G0000875	unclassified gene	Chr2:6979917-6981721 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000848	unclassified gene	Chr2:7233784-7235464 (+)
WSB/EiJ	MGP_WSBEiJ_G0000928	unclassified gene	Chr2:7336625-7338298 (+)

Homology

• Gene Tree
  C630004M23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• UniProt
  1

• Ensembl
  ENSMUSG00000103570 (Evidence)
• NCBI Gene
  791351

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103570	Ensembl Gene Model | MGI Sequence Detail	1682	C57BL/6J
transcript	AK049866	GenBank | ENA | DDBJ | MGI Sequence Detail	1684	C57BL/6J
polypeptide	Q8C7M7	UniProt | EBI | MGI Sequence Detail	272	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;