Gm9989 Gene Detail

Summary

• Symbol
  Gm9989
• Name
  predicted gene 9989

• Feature Type
  lncRNA gene
• IDs
  MGI:3642361
  NCBI Gene: 102640985
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:81825315-81831770 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 35.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642361	lncRNA gene	Chr3:81727263-81840928 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015506	unclassified non-coding RNA gene	Chr3:81707306-81714428 (-)
A/J	MGP_AJ_G0015483	unclassified non-coding RNA gene	Chr3:79003031-79010163 (-)
AKR/J	MGP_AKRJ_G0015446	unclassified non-coding RNA gene	Chr3:80874070-80880465 (-)
BALB/cJ	MGP_BALBcJ_G0015445	unclassified non-coding RNA gene	Chr3:79104811-79111461 (-)
C3H/HeJ	MGP_C3HHeJ_G0015268	unclassified non-coding RNA gene	Chr3:81158688-81165081 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015899	unclassified non-coding RNA gene	Chr3:84818066-84824928 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013636	unclassified non-coding RNA gene	Chr3:74769305-74775548 (-)
CAST/EiJ	MGP_CASTEiJ_G0014821	unclassified non-coding RNA gene	Chr3:81331199-81337558 (-)
CBA/J	MGP_CBAJ_G0015249	unclassified non-coding RNA gene	Chr3:87653218-87659537 (-)
DBA/2J	MGP_DBA2J_G0015343	unclassified non-coding RNA gene	Chr3:78563701-78570418 (-)
FVB/NJ	MGP_FVBNJ_G0015350	unclassified non-coding RNA gene	Chr3:76852421-76858855 (-)
LP/J	MGP_LPJ_G0015421	unclassified non-coding RNA gene	Chr3:82710728-82717093 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015374	unclassified non-coding RNA gene	Chr3:94036916-94044643 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015940	unclassified non-coding RNA gene	Chr3:80672816-80679232 (-)
PWK/PhJ	MGP_PWKPhJ_G0014609	unclassified non-coding RNA gene	Chr3:78295955-78302516 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014397	unclassified non-coding RNA gene	Chr3:79889773-79896142 (-)
WSB/EiJ	MGP_WSBEiJ_G0014928	unclassified non-coding RNA gene	Chr3:81018278-81025327 (-)

Homology

• Gene Tree
  Gm9989
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9989
• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4

• Ensembl
  ENSMUSG00000056023 (Evidence)
• NCBI Gene
  102640985

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000056023	Ensembl Gene Model | MGI Sequence Detail	6456	C57BL/6J
transcript	ENSMUST00000069880	Ensembl | MGI Sequence Detail	3196	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426